Mycolicibacterium gilvum Spyr1: Mspyr1_12280
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Entry
Mspyr1_12280 CDS
T01376
Name
(GenBank) DNA ligase D/DNA polymerase LigD
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
msp
Mycolicibacterium gilvum Spyr1
Pathway
msp03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
msp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Mspyr1_12280
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
msp03400
]
Mspyr1_12280
Enzymes [BR:
msp01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Mspyr1_12280
DNA repair and recombination proteins [BR:
msp03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Mspyr1_12280
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
ADT97908
UniProt:
E6THW1
LinkDB
All DBs
Position
1249098..1251398
Genome browser
AA seq
766 aa
AA seq
DB search
MVDRYDRVKLTNPDKVLYPASGTTKAQVFEYYVNVAEGMLPHIAGRAVTRKRWPNGVEES
SFFEKQLASSAPDWLDRGTIAHKSGTTTYPVIDTVEGLAWIAQQAALEVHVPQWRFTRGG
QSGAADGGDGKPGPATRIVFDLDPGEGVTFRQLCEVAHEVRELITDIGLTTFPLTSGSKG
LHLYVPLEDPISSRGASVLAKRVAQQLEQSMPKRVTATMTKSLRDGKVFLDWSQNNGNKT
TIAPYSLRGRERPTVAAPRTWDEIEDPDLRHLTFDEVLDRLERDGDLLADLDPPLPATDK
LTRYRSMRDRTKTPEPVPAEPPETGANDKFVIQEHHARRLHYDFRLERDGVLVSWAVPKN
LPDTPSVNHLAVHTEDHPMDYIDFAGEIPKGEYGGGEVHIWDTGTYETEKFRDNPPDGPA
KGGEVIVTLHGQKIEGRYALIQTDGKNWLAHRMKDQQKPTAADLAPMLTTEGSVERLTRG
QWAFEGKWDGYRLLVDADHGKLTLRSRRGRDVTAEYPQLKALAADLADHHVILDGEAVAL
DEDGVPSFGEMQNRARSTRVEFWAFDILFLDGRLLTKATYTDRRKLLEALAEGGGLIVPP
ALEGDGPEALEYARSQRWEGVIAKKRDSTYQPGRRSSAWIKDKIWNTQEVVIGGWRQGEG
GRTSGIGALVLGVPDDDGLHFVGRVGTGFTDKQLASLKKSLEPLRTDESPFAAELPKQDA
KGVTFVRPELVGEVRYSERTSDGRLRQASWRGLRDDKVPEDVRWEG
NT seq
2301 nt
NT seq
+upstream
nt +downstream
nt
gtggtggaccgttatgaccgggtgaagctgaccaacccggacaaggtgctgtatccggcc
agcggcaccaccaaagcgcaggtcttcgagtactacgtgaatgtcgccgagggcatgctg
ccacacatcgccggacgtgccgtgacacgtaagcggtggccgaacggcgtcgaggagtcg
tcgttcttcgagaagcagctcgcgtcgtcggcgccggactggctggaccgcggcaccatc
gcgcacaagtccggcaccaccacctatccggtcatcgacaccgtcgaggggctggcctgg
atcgcgcagcaggcggcgctggaggtgcacgttccgcagtggcggttcacccggggcggg
cagagtggggcggctgacggcggggacggaaagccggggccggcgacgcggatcgtgttc
gacctcgaccccggcgagggtgtcacgttccgtcagctctgcgaggtcgcccacgaggtg
cgcgagctcatcaccgacatcgggctcacgacgttcccgctgaccagcggaagcaagggc
cttcatctgtacgtcccgctggaggacccgatcagttcccgcggggcgtcggtgctcgcc
aagcgcgtggcgcaacagctcgagcagagcatgcccaagcgggtcaccgcgacgatgacc
aagagcctgcgcgacggcaaggtgtttttggactggagtcagaacaacggcaacaagacc
acgatcgcgccgtactcgcttcgtggacgggaacgtccgacggtcgccgctccccggacg
tgggatgagatcgaggacccggacctgcgtcacctgaccttcgacgaggtgctcgaccgg
ttggagcgcgacggtgacctgctcgccgacctcgacccgccattgccggccaccgacaag
ctcacccgttaccgcagcatgcgagaccgcacgaagacgccggagccggtgcccgctgag
ccgcccgagaccggcgcgaacgacaagttcgtgatccaggagcaccatgcgcggcggttg
cactacgacttccggctggagcgtgacggtgtcctggtgagttgggcggtaccgaagaac
cttcccgacaccccgtcggtcaatcaccttgcggtgcacaccgaagaccatccgatggac
tacatcgacttcgccggcgagatcccgaaaggggagtacggcggcggcgaggtccacatc
tgggataccggcacgtacgagacggagaagttccgcgacaacccgcccgatggaccggcc
aagggcggcgaggtgatcgtcacgctgcacggtcagaagatcgagggccggtacgcgttg
atccagaccgacggcaagaactggctcgcgcaccggatgaaggaccagcagaagccgacc
gcggccgacctggcgccgatgctgaccaccgagggatcggtggagcgactcaccaggggc
caatgggcgttcgaggggaaatgggacggctatcggctcctggtcgacgccgaccacggc
aagctgacgctgcggtctcggcggggccgtgacgtcaccgccgaatacccgcagttgaag
gcgctcgccgccgacctggccgaccatcacgtgattctcgacggggaggcggtggcgctc
gacgaggacggggttccgagtttcggtgagatgcagaaccgggcccggtcgacgcgggtc
gagttctgggcgttcgacatcctgttcctcgacggccggttgctgaccaaggccacgtat
accgatcggcgaaagctgttggaggcgttggccgaaggcggaggattgatcgttccaccc
gcccttgagggggacgggcccgaggcgctggagtacgccagatctcagcggtgggagggc
gtgatcgccaaaaaacgggactccacgtatcagccgggccggcggtcctcggcctggatc
aaggacaagatctggaacacccaggaagtggtgatcggcgggtggcgccagggtgaaggt
gggcgcacgagcgggatcggggcgctcgtgctcggagtgcccgacgacgacggactgcac
ttcgtcggacgtgtcggcaccgggttcaccgacaagcagctggcgtcgttgaagaagtct
ctggagccgctgcgcaccgacgaatcacccttcgcggcagagcttcccaagcaggacgcc
aagggggtgacgttcgtgcggccggaactggtgggggaggtgcgctacagcgagcgcacg
tccgacggccgtctgcggcaggcgagctggcgcggtctgcgcgacgacaaggttcccgag
gatgttcggtgggaggggtag
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