Mycobacterium spongiae: F6B93_17760
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Entry
F6B93_17760 CDS
T07689
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mspg
Mycobacterium spongiae
Pathway
mspg03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mspg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
F6B93_17760 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mspg03400
]
F6B93_17760 (mfd)
Enzymes [BR:
mspg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
F6B93_17760 (mfd)
DNA repair and recombination proteins [BR:
mspg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
F6B93_17760 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
LSDAT_prok
AAA_22
MFD_D3
Motif
Other DBs
NCBI-ProteinID:
QUR68679
UniProt:
A0A975JZP0
LinkDB
All DBs
Position
complement(4370566..4374288)
Genome browser
AA seq
1240 aa
AA seq
DB search
MTAPGPASPDTPIAGLVELALTAPTFRQLIERAENRPDELTLVGPASARLFVVSALAQQG
PVLVVTTTGHEADDLTAELRGAFGDAVATFPSWETLPHERLSPGVDTVGARLMVLRRLAR
PDPDPDGAWLGPPLRVVVTSVRSLLQPMTPRLGEQEPVTLRVGQEIAFEQVIARLIALAY
TRVDMVGRRGEFAVRGGILDIFAPTAEHPVRVEFWGDEITEMRMFSVADQRSIPEIEVPT
LVAVACRELLLSDDVRARAAELAKQHPAAEGSITGSVSDMLAKLAAGIPVDGMEALLPVL
RPDDHALLTDQLAEGTPVLVCDPEKVRSRAADLIKTGREFLEASWSVAAMGTESEAPVDV
AQLGGSGFVELDQVRTAASQSGHPWWTLSQLSDESALELDIRPAPSARGHQHDIDGIFAM
LRAHVATGGYAAVVAPGAGTAHRVVERLAESDTPAAMLEPDAPAGAGSTSLTPGLVGVLK
GPLHDGVVIPGANLVVITESDLTGSRATSVEGKRLAVKRRNTVDPLALSAGDLVVHDQHG
IGRFVEMVERTVGGARREYLVLEYASSKAASKSGQQSDKLYVPMDSLDQLSRYVGGQAPA
LSRLGGSDWANTKTKARRAVREIAGELVALYAKRQASAGHAFGSDTPWQSEMEDAFGFTE
TADQLTAITEVKADMEKPVPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLL
ADQHLQTFADRMAGFPVTVKGLSRFTDAAESRAVTDGLADGSVDVVIGTHRLLQTGVRWK
DLGLVVVDEEQRFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPE
DRYPVLTYVGPHDDKQVAAALRRELLRDGQAFYVHNRVSSIDQAAARVRGLLPEARVVVA
HGQMPEDLLERTVAGFWNRECDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRG
RVGRSRERGYAYFLYPPQAPLTETAYDRLATIAQNNELGAGMAVALKDLEIRGAGNVLGV
EQSGHVAGVGFDLYVRLVGEAVEAYRAAADGKTVITAEEPKDVRVDLPVDAHLPTDYIGS
DRLRLEGYRRLAAAADNAAVQAVVDELTDRYGALPEPARRLVTVARLRLLCRASGITEVT
ASSAASVRLSPLTLVDSAQVRLARLYPGARYRATTSTVQVPIPRAGGMGAPRIRDVELVQ
MVANVVTALAGVPQQDIGMTSSNPTRDDTDRSTPVQERHA
NT seq
3723 nt
NT seq
+upstream
nt +downstream
nt
atgaccgcaccggggcctgctagcccagataccccgatcgcggggctcgtcgagctggca
ttgaccgcgccgacgttccggcagctcatcgagcgtgccgagaatcggccagacgagttg
acactcgtcgggccggccagcgcacggctgttcgtcgtcagtgctctcgcccagcaaggt
ccggtgctggtggttaccaccaccggacacgaagccgatgacttgaccgcggaactgcgg
ggggccttcggtgacgcggtggcgaccttcccgtcgtgggagacgcttccgcacgaaagg
ctctcacccggggtggataccgtcggagcgcggctgatggtgctgcgccggttggcccgt
ccggatcccgatcccgacggagcctggttggggccgccactgcgggtggtcgttacgtcc
gtgcgctcgctgctgcagcccatgacgccccggctgggcgaacaggaacccgtcacgttg
cgtgtcggccaagagattgccttcgagcaggtaatcgctcggttgatcgccctggcgtac
acccgggtggatatggtcggccggcggggcgagtttgccgttcgcggcgggattctcgac
atcttcgctcccactgccgagcacccggtgcgcgtcgagttctggggtgacgagatcacc
gaaatgcggatgttctcggtcgccgaccagcgatcgattccggagatcgaggttcccacc
ctggttgcggtggcttgccgtgaactgttgctcagtgatgacgtgcgggcgcgggccgcc
gagctggccaaacagcatcccgcggccgagggctcgatcaccggcagtgtttcggacatg
ctggccaagttggccgccggcatcccggtcgacgggatggaggcactgctgccagtgttg
cggcccgacgatcatgcgctgctgaccgatcagctcgccgagggtacgccggtgttggtg
tgcgatccggaaaaggtgcgttcccgggccgccgatttgatcaagaccggtcgtgaattc
ctggaagcgtcgtggtcggtcgcagccatgggcaccgaaagcgaggccccggtcgacgtt
gcccagctgggcggatccgggttcgtcgaactggaccaggtgcgaaccgcggcaagtcaa
tccggccatccctggtggacgctgagccaactgtccgacgagtcggcgttggagctggac
attcggcctgcaccctcggcgcgtggtcatcagcacgacatcgacggcattttcgcgatg
ctgcgcgcgcatgtcgcgaccggggggtacgcggcagtggtggcgccgggggccggcacg
gcgcatcgagtggtggagcgcctggctgagtccgatacccctgcggccatgctggaacct
gatgcgccggccggcgccggttccacgagtctcacgccggggctggttggggtgctcaag
ggtccgctgcacgacggtgtggtcattcccggcgcgaatctggtggtcatcacggaaagt
gatctgaccggcagccgggccacgtccgttgagggcaaacggttggccgtcaagcgacgc
aacaccgtggacccattggcgctgtcggcgggcgacctcgtggtgcacgatcagcacggc
attggacggttcgttgagatggtcgagcgcaccgtgggtggagcccgccgtgaatatctc
gtgctcgagtacgcgtcgagcaaggcggcgagcaagagtggccagcagtccgacaaactt
tacgtcccaatggattcactggatcagctgtcccgctatgtcggtggccaggcgccggcg
ctgagtcggctcggtggcagcgactgggcgaacaccaagacaaaagcgcgccgggcggtg
cgcgaaatcgcgggtgagctcgtggcgctctacgccaagcggcaggctagtgccggccac
gccttcgggtcggacaccccgtggcagagcgagatggaggacgcgttcggtttcaccgag
actgcggaccagttgacggcgatcaccgaggtcaaagccgacatggagaagccggtgccg
atggaccgggtgatctgtggtgacgtcggctacggcaagaccgagatcgcggtgcgggcc
gcgttcaaggcggtccaggacggcaagcaggtcgcggtactggtgcccacgaccttgctg
gctgaccagcatctgcagacgttcgccgatcggatggccgggttcccggtgacggtcaag
ggtctgtcccgatttactgacgccgccgagtcgcgcgcggtgaccgatggtctggccgac
gggtcggtggacgtcgtgatcggcacccaccggctgttgcagaccggggtgcgctggaaa
gacctgggcctcgtcgtggtcgatgaggagcaacggtttggcgtcgagcacaaggaacac
atcaaatcgctgcgcacccacgtcgacgtgttgaccatgagtgctaccccgataccgcgg
actctggagatgagcctggccgggattcgtgagatgtcgacgatcctgaccccgccggaa
gaccgctacccggtgctgacgtacgtcggcccacacgacgacaagcaggtggccgccgcg
ctacgcagggagctcctgcgcgacgggcaggctttctatgtgcataaccgcgtcagctcc
atcgatcaggccgctgcgcgggtacgcggtttgctgcccgaggcgcgtgttgttgttgcg
cacggtcagatgcccgaggatctgctggagcgcacggtggcggggttctggaatcgtgaa
tgcgacattctggtgtgcaccacgatcgtcgagacgggcctcgatatttccaacgccaac
acgttgatcgttgagcgcgccgatactttcgggttgtcgcagctacatcagcttcgtggc
cgggtcggccgcagtcgcgagcgcgggtatgcctacttcttgtacccgccgcaggcgccg
ctgaccgaaaccgcctacgaccggttggcgaccattgcgcaaaacaacgagctgggcgcg
gggatggccgtcgcgctgaaggacctggagatccgtggggcgggcaacgtcctcggggtg
gagcaatccggacacgtcgccggggttggtttcgacctgtacgtgcggctggtgggcgag
gccgttgaggcgtatcgagccgccgccgacggcaagactgtgatcaccgccgaggagccc
aaagatgtgcgcgtcgacttgccggttgacgcgcacctgccaacggactacatcggcagc
gaccgactccggctggagggctaccggcgattggcggccgccgccgacaatgcggctgtg
caggccgtcgtggatgagctgaccgaccgctacggtgcgttgcccgaaccggcaaggcgg
ttggtgacggtggcgcggctgcggctgctatgccgcgcttccggtatcaccgaggtgacg
gcgtcgtcagccgctagtgtgcggctctcgccactgacgctggtcgattccgcgcaggtg
cggctggcgcgactgtatcccggagcgcgctaccgcgccacgacgtccaccgtccaggtg
ccgatcccgcgggccgggggaatgggggcgccgcgcatccgcgacgtcgagctggtccag
atggttgccaacgtggtgaccgcgctggccggggtgccacagcaggatattggtatgacg
agttcgaacccgacgcgcgacgatacggaccgcagcacgccggtgcaggagcggcacgcg
tga
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