Mycetocola spongiae: KXZ72_13360
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Entry
KXZ72_13360 CDS
T08087
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
mspo
Mycetocola spongiae
Brite
KEGG Orthology (KO) [BR:
mspo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mspo03019
]
KXZ72_13360 (hrpA)
Enzymes [BR:
mspo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
KXZ72_13360 (hrpA)
Messenger RNA biogenesis [BR:
mspo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
KXZ72_13360 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
DEAD
HA2_C
AAA_19
AAA_22
AAA_30
ResIII
UvrD-helicase
NACHT
nSTAND3
T2SSE
AAA_16
HA2_N
SRP54
AAA_23
TsaE
SLFN-g3_helicase
Motif
Other DBs
NCBI-ProteinID:
UCR88917
LinkDB
All DBs
Position
complement(2911255..2915118)
Genome browser
AA seq
1287 aa
AA seq
DB search
MSLAITFPPELPVSQKRDEIAAAIAGNQVVILAGATGSGKTTQLPKICLELGRENIGHTQ
PRRIAARTIAERIAEELGEEVGGTVGYQVRFTDRASADTKIKLMTDGILLNEIHHDRLLR
RYDTIIIDEAHERSLNIDFLLGYLKQLLPKRPDLKIIVTSATIDPESFSKHFNDAPIIEV
SGRTYPVEIRYRPLVADAQEGEEDPDEPQRDDRNYIEGIIEGLDELARESLGDVLVFLSG
EAEIRDAADALRAHFAGSAGGVTEILPLYGRLSSEEQHRVFRPGSGAGVRRRVILATNVA
ETSLTVPGIKYVIDAGTARISRYSVRAKIQRLPIEAISQASANQRSGRTGRTSPGIAIRL
YSEDDFSKRPEFTEPEVLRTNLAAVILQMVSLGLGDIAAFPFLQAPESRGIKDGLDLLTE
LGAVQAGTSLTPRLTRVGKDLSRLPIDPRFARMVLESKKHGTTREVMVIVAALTIQDPRE
RPVEKRQQADEFHARFADPISDFLSLLGLWNYLEEKQRELSSSAFRRLCKSEFLNYLRIR
EWQDVYRQLKRLSSPLGLRVGDPAANPEGVHRSILAGLLSQIGIKDESAAAAAAAAKKRG
TGAGAGPRKKGDYIGARQARFVIFPGSSLIKKQPAAIMAAELVETSRLFARTVAAIDPAW
AEEIAPDLCKRNYSEPHWEKSQGAVVAYEKVTLFGVPIIPRRRVQYSRIDPEVSRDLFIR
HALVERDADFSRLNQKLFAFDRQNAGLRRELAEREERTRRRDILFDDEAVYDFYHARIPA
TVTDLRGFEKWWRTESAASPKLLTMRPEDLLPEDAEEIDVTLFPPIWVQGDQRLTLRYRF
EPGTADDGVTVVVPLALLPRISPLGFDWQVPGLRAELVTAMIKSLPKPIRRNVVPAADWA
AKLLADLPADPPQPNGTQDDTLAARLAIAIKRQVYIPVEASDFDVNRIPDHLRISFRAVD
ERGRALGVEKDLTLLQAKLAEKTRTQVAKVAQARRADPIERTGLTKWDFDELPRFIDSDQ
GGHTVRGYPALVDHRDSVAIEIMATEADQLRALPGGVRRLLLLQTASPVSYVQNHLTAPE
KLTLAASPYPSTPALFEDCLAACINDVLYRMNPSGAVFMRAEFEKIRDRVSQSVMNSMFE
TVSLVSRVLGAAREADKALSSATSLSLLPALADMKAQRAGLVYPGFVSATGLTRLRDLPR
YLAGITHRAQRLPDNPNRDRAWQNDIEAATARFTAAGGKIPLPEHAAENLVRARWMLEEF
RISLFAQHLGTSESTSLQRITKVLDAG
NT seq
3864 nt
NT seq
+upstream
nt +downstream
nt
atgtcacttgcaatcacgttcccgcccgagctgccggtttcgcagaaacgcgatgagatc
gcggccgccatcgcgggtaaccaggttgtgatcctggccggggccacgggctccggaaag
accacccagctgcccaagatctgcctcgagctgggccgcgaaaatatcggccatacccag
ccgcgccgcatcgccgcgcgcaccatcgccgagcgcatcgccgaggaactgggcgaggag
gtgggcggcaccgtgggctatcaggtgcgtttcaccgatcgggcaagcgccgataccaag
atcaagctcatgaccgacggtattctcctgaacgagattcaccacgaccggctcctgcgt
cgatatgacacgatcatcatcgatgaggcccacgagcgtagccttaatatcgactttttg
ctgggctatctgaagcagctgctgcccaagcgccccgatctgaagatcatcgtgacctcc
gcgacgatcgacccggaatccttttccaaacactttaacgatgccccgatcatcgaggtc
tcgggccgcacctatcccgtggagatccgctaccgcccgctcgtggccgatgcccaggag
ggcgaggaagaccccgatgagccgcagcgcgatgaccgcaactatatcgagggcatcatc
gagggcctggatgagctcgcgcgcgaatccctcggcgatgtgctggtattcctctccggc
gaggccgagatccgcgatgccgccgatgcgctgcgcgcgcattttgccggctccgccggg
ggcgtcacggagatcctgccgctttatggccggctcagctccgaggagcagcaccgggta
ttccgtccgggctcgggcgcgggtgtgcgccgccgggtaatcctcgcaaccaacgtggcc
gagaccagcctcacggtgcccggcatcaaatatgtgatcgatgccggtaccgcgcgcatc
tcgcgctatagcgtgcgcgccaagatccagcgcctgcccatcgaggccatctcccaggcc
tccgcaaatcagcgctcgggccgcacgggccgcacgagccccggaatcgcgatccggctg
tactccgaggatgatttttccaagcgtcccgagttcacggaacccgaggttctgcgcacc
aacctggccgccgtgatcctacagatggtctcgctgggcctcggcgatatcgccgcgttc
ccgttcctgcaggcccccgaatcacggggcattaaggacggcctggacctgctcaccgag
ctaggtgccgtccaggccggaacctcgctgaccccgcggctcacccgcgtgggcaaggac
ctctcccggctgcccatcgatccgcgctttgcccggatggtgctggagtccaagaaacac
ggcaccacccgcgaggtcatggtgatcgtggcggccctgaccattcaggacccgcgcgaa
cgccccgtggaaaaacgccagcaggccgatgaattccatgcccgcttcgccgaccccatc
agcgatttcctctcgctgctggggctctggaactatctggaggaaaagcagcgcgagctg
tcctcctcggcgttccgccgcctgtgcaagagcgagttcctgaactatctgcgcatccgc
gaatggcaggatgtttaccgccagctcaagcgcctgtcctccccgctggggctgcgggtg
ggcgatcccgcggccaatcccgagggtgtgcaccgctcgatcctcgccggactactctcc
cagatcggcattaaggacgaatcggcggccgccgccgcggccgcggccaagaagcgcggc
accggcgcgggcgcgggcccacgcaagaagggcgactatatcggcgcgcgccaggcccga
tttgtgatcttccccggctcctcactgatcaaaaaacagcccgccgcgatcatggccgcc
gagcttgtggaaaccagccggctctttgcccgcacggtggccgcaatcgacccggcctgg
gccgaggagattgcccccgatctgtgtaaacgcaattattcggagccgcactgggagaag
tcccagggcgcggtggtggcctatgagaaggtcacgctttttggcgtgccgatcattccg
cgccgccgggtgcagtattcccgcatcgatcccgaggtcagccgcgacctcttcatccgg
catgccctcgtggagcgcgacgccgatttcagccgcctcaaccagaagctctttgcgttt
gaccggcaaaatgccgggctgcgccgcgaactggccgagcgcgaggagcgcacccgtcgc
cgcgatatcctctttgacgatgaggccgtttacgatttttatcacgcccgcatcccggcc
acggtcacggatctgcgcggctttgagaagtggtggcgcaccgaatcggcggcctccccc
aagctgctcacgatgcgccccgaggatctgctgcccgaggacgccgaggagatcgacgtc
acgctcttcccgcccatctgggtgcagggcgatcaaaggctcacgctgcgctatcgcttt
gagcccggcacggccgatgacggggtgaccgtggtggtgccgctagcgctgctgccgcgg
atctccccgctgggctttgactggcaggttccggggctgcgcgccgagctggtcacggcg
atgattaagtccctccccaagcccatccggcgcaatgtggtgcccgcggccgattgggcc
gcgaagctgctcgcggatctgcccgccgatccgccccagcccaatggcacgcaggacgat
accctcgcggcgcggctcgccatcgcgattaaacgccaggtctatatcccggttgaggcc
tccgattttgacgtgaatcgcattcccgatcacctgcggatcagcttccgcgcggtggat
gagcgcgggcgcgcgctcggcgtggaaaaggatctcacgctcctgcaggccaagctcgcc
gaaaaaacccgcacccaggtggccaaggtggcccaggcccgccgcgccgatccgatcgag
cgcaccggactcaccaaatgggactttgacgagctgccgcgcttcatcgacagcgatcag
ggcggacataccgtgcgcggctatccggcgctcgtggatcaccgcgattccgtggccatc
gaaatcatggccaccgaggccgatcaactgcgcgcgctgcccggcggcgtgcgccgcctg
ctgctcctgcagacggcctcgccggtgtcctatgtccaaaaccatctcacggcccccgag
aagctcacgctcgccgcgagcccgtatccctccaccccggcgctctttgaggactgcctc
gcggcatgcattaacgacgtgctgtatcgaatgaatccgagcggtgcagtgtttatgcgg
gccgagtttgagaagatccgcgatcgggtatcccagtcggtcatgaactcgatgtttgag
accgtctcgctcgtttcgcgtgtgctcggggctgcccgcgaggccgataaggcgctgtcc
tccgcgaccagcctgagcctgctgcccgcgctggcggatatgaaggcccagcgcgcgggc
ctggtctatccgggttttgtctcggccaccggcctcacccggctgcgggatctgccgcgc
tatctcgccgggatcacgcatcgtgcgcagcggctgccggataatcccaatcgcgatcgc
gcctggcaaaacgatatcgaggcggccacggcgcgcttcaccgccgcgggcgggaagatc
cccctgcccgaacacgccgcggaaaacctggtgcgggcgcgctggatgctggaggagttc
cggatcagcctatttgcgcagcatctgggcaccagcgagtccacgtccctgcagcgcatc
accaaggttctggacgccggctag
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