Mycetocola spongiae: KXZ72_13635
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Entry
KXZ72_13635 CDS
T08087
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mspo
Mycetocola spongiae
Pathway
mspo03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mspo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
KXZ72_13635 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mspo03400
]
KXZ72_13635 (mfd)
Enzymes [BR:
mspo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
KXZ72_13635 (mfd)
DNA repair and recombination proteins [BR:
mspo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
KXZ72_13635 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
Motif
Other DBs
NCBI-ProteinID:
UCR88968
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All DBs
Position
2970739..2974347
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AA seq
1202 aa
AA seq
DB search
MMLSGLISALSGAPSFRNALGYAPRDADFSVTEGLRAPLLAGLLAERGAAGAPPALLAIT
ATGRDSESLIAALESLLPGGLIVDFPAWETLPHERLSPSAEIVGKRLAALRSLRTWDGKT
PLVLVASVRAALQPIADNLAAGDPITLVAGGRGYDLHGLAAELVELAYARVDMVSRRGEF
ALRGGILDVFPPVADHPYRVDFFGDEVEQIRAFSVADQRSLPEPIPGLELGPSRELLLTA
PVRQRAREMLHEFPNLSSMLEKISEGIPVEGMESLAPALLERLVNLGHYLPEGTAVAVIA
PERVTTRAISLSETNREFLAAAWNAATAGAGAPIDLESGEFITLGAFRDSLKYSRPGESA
GDHPWWTLSSFQQGPEDTNLIDVDAMLEIRIDAEAVPTFHGNVEGAIDHIAQRLGEGWSV
VVSARGAGLVERARDVLSERGLAARMVDSLPAELDTGVAYLVQAAAEHGFEETEIRLALI
SEAEFYGRAVGYDSRAVKKLASRRKNVVDPLQLTPGDFVVHQTHGIGKFVELTQRTVSGG
GRNPTKTLREYLVLEYAPNKRGYPGDKLLVPTDQLDLLSRYVGGEAPQLSKMGGSDWSQA
KSKARKAVRDIAVELVKLYSARMASRGHAFGPDTPWQRELEEAFPFAETPDQLTTIEEVK
ADMEKSIPMDRLLSGDVGFGKTEVAVRAAFKAIQDGKQVAILVPTTLLVKQHFETFAERY
AGFPIHLRALSRFQTAKEAKEVIDGLERGTVDLVIGTHRLLTDNVVFKDLGLVIIDEEQR
FGVEHKDKLKKLKTNVDILAMSATPIPRTLEMAVTGIREMSTLATPPEERQPVLSFVGPY
NEKQVAASIRRELLREGQIFFVHNRVSSIGRVASQLAELVPEARIAIAHGQLSEAQLEQV
VVDFWERKFDVLVCTTIIETGLDISNANTIIIDRADKYGLSQLHQLRGRVGRGRERAYAY
FLYDPAKPLSETAHDRLATIAANNELGAGMQVALKDLEIRGAGNLLGGEQAGHIAGVGFD
LYLRMVGEAVSTFRGDDTEGPAELRLELPIDAHIPDDYVDSERLRLEAYQKLSSAASGQV
VADVDRIDLVLEELRDRYGEPPQVVQNLIDIARLRRRAQASGLSDVVTMGSNLRIAPAHL
PDSLQARLRRMYPSAKYLANGDALVVPMPVINGEALADAELIAWVRELLDALFPLPRDAA
AG
NT seq
3609 nt
NT seq
+upstream
nt +downstream
nt
gtgatgctttcgggtttgatttccgcactctcgggtgccccctcgttccgtaatgccctc
ggctatgcgccgcgggatgccgacttctcggtcaccgaggggctccgcgccccgctgctg
gcggggctgcttgccgagcgcggggccgcgggtgccccgcccgcgctcctggccatcacc
gccaccgggcgcgattccgagtccctcatcgcggcactcgaatccctgctgcccgggggc
ctcatcgtggacttcccggcctgggagaccctgccgcatgagcgcctgagcccctccgcg
gagatcgtggggaagcgcctcgccgccctgcgcagcctgcgcacctgggacggcaaaacc
ccgctggtgctggtggcctcggtgcgcgccgcgctgcaacccatcgccgataacctcgcc
gcgggagacccgatcaccctcgtggccgggggccgcggctacgatctacacggcctcgcc
gccgagctcgtggaactcgcctatgcgcgcgtagacatggtgtcccgccgcggcgagttt
gcgctgcgcggcggcatcctcgacgtcttcccgcccgtggccgatcacccctaccgggtc
gattttttcggcgatgaggtcgagcagatccgcgcgttctcggtggccgatcagcgctcc
ctgcccgagcccatcccgggcctggagctgggcccgagccgcgagctgctgctcacggcc
cccgtgcgccagcgcgcccgggagatgctgcacgagttccccaatctctcctcgatgctc
gaaaaaatctccgagggtatccccgtggagggcatggaatcgctggcccccgcgctcctg
gagcggctcgtgaatctgggccactatctgcccgagggcacggccgtggccgtgatcgcc
cccgagcgtgtcaccacgcgcgccatcagcctgagcgagaccaaccgcgagtttctcgcc
gccgcctggaatgccgccacggccggggccggcgccccaatcgacctcgagagcggagag
ttcatcacgctcggggcgttccgcgattcgctgaaatactcccgcccgggcgagagcgcg
ggcgatcacccgtggtggacgctgagctcattccagcagggccccgaggataccaacctg
atcgatgtggacgcgatgctggagatccgcatcgatgccgaggccgtgcccaccttccac
ggcaatgtggagggcgcgatcgaccatatcgcccagcgcctcggcgagggctggagcgtg
gtggtctcggcgcgcggcgcgggcctcgtggagcgcgcccgcgatgtactcagcgagcgc
gggctggccgcccgcatggtggactccctgcccgccgagctggataccggtgtggcctat
ctggtgcaggccgcggccgagcacggcttcgaggagaccgagattcgcctggccctgatc
agcgaggccgagttttatggccgcgcggtgggctacgattcccgggccgtaaaaaagctc
gcctcgcgccgcaaaaacgtggtggacccgctccagctcacgccgggcgattttgtggtt
caccagacccacggcatcggaaaatttgtggagctcacccagcgcaccgtctcgggtggc
ggccgcaatcccaccaaaaccctgcgcgaatatctggtgctggaatacgcgccgaataag
cgcggctatccgggcgataagctccttgttcccacggatcagctcgacctcctctcgcgc
tatgtgggtggcgaggccccgcagctctccaagatgggcggctcggattggtcccaggcc
aagagcaaggcgcgcaaggccgtgcgcgatatcgcggtggagctggtgaagctctattcc
gcgcggatggccagccgcgggcatgcctttggcccggataccccgtggcagcgcgagctg
gaggaggcgttcccgtttgcggagacccccgatcagctcaccaccatcgaggaggtcaag
gcggatatggagaagtccattcccatggaccgcctgctctcgggagacgtgggctttggt
aaaaccgaggtggcggtgcgcgccgcgtttaaggccattcaggacggcaagcaggtggcc
atcctggttcccaccaccctgctcgtgaagcagcacttcgagaccttcgccgagcgctat
gccgggttccccatccacctgcgcgcgctcagccgcttccagaccgcaaaggaggccaag
gaggtcatcgacggcctggaacgcggcaccgtggacctggtgatcggaacccatcgcctg
ctcaccgataacgtggtctttaaagacctcggcctcgtgatcatcgacgaggaacagcgc
ttcggtgtggagcataaggataagctcaaaaagcttaagaccaacgtggatatcctcgcg
atgagcgccacccctatcccgcgcacgttggagatggccgtgaccggcatccgcgaaatg
tccacgctggccaccccgcccgaggagcgccagcccgtgctgagctttgtggggccctat
aacgaaaagcaggtggccgcgtcgattcgccgcgagctgctgcgcgaggggcagatcttt
tttgtccataaccgcgtgtccagcatcggccgggtcgcgagtcagctggccgagctggtg
cccgaggcgcgcatcgcgatcgcgcatggtcagctctccgaggcgcagctggagcaggtg
gtggtggatttctgggagcgcaaatttgatgtgctggtgtgtaccaccatcatcgagacc
ggcctggatatctccaatgccaataccatcatcatcgatcgcgccgataaatacggcctg
agccagctgcaccagctgcgcgggcgcgtgggccgcgggcgcgagcgcgcctatgcgtat
ttcctctacgatccggccaagccgctctccgagaccgcccacgaccgcctcgccaccatc
gcggccaataacgagctcggtgcgggcatgcaggtggcgctcaaggatctggagatccgc
ggggccggcaacctgctgggcggcgagcaggccggacatatcgcgggggtgggttttgac
ctctacctgcgcatggtgggcgaggccgtgagcacgttccgcggcgacgataccgagggc
ccggccgagctgcgccttgagctccccatcgacgcccatatccccgatgattatgtggat
agcgaacggctgcgcctggaggcctatcagaagctgtcgagtgccgcctcgggccaggtg
gtcgccgatgtggaccgcatcgacctcgtgcttgaggagctgcgcgatcgctatggcgag
cccccgcaggtggtccaaaacctgatcgatattgcgcgcctgcgccgccgcgcccaggcc
tcgggcctgagcgatgtggtcacgatgggctccaatctgcgcatcgcgcccgcgcatctg
cccgattcgcttcaggcgcggctgcggcgcatgtatcccagcgccaaatacctggccaat
ggcgatgccctggtggtgccgatgcccgtgatcaacggcgaggcgctggccgatgccgag
ctgatcgcctgggttcgcgagctgctggacgcgctattcccgctgccgcgggacgccgcc
gcgggctag
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