Marinobacter salinus: BKP64_03140
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Entry
BKP64_03140 CDS
T04766
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
msq
Marinobacter salinus
Pathway
msq03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
msq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BKP64_03140
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
msq03400
]
BKP64_03140
Enzymes [BR:
msq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BKP64_03140
DNA repair and recombination proteins [BR:
msq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BKP64_03140
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
SNF2-rel_dom
ERCC3_RAD25_C
UB2H
SecA_DEAD
AAA_30
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AOY87260
UniProt:
A0A1D9GIQ2
LinkDB
All DBs
Position
complement(667433..670966)
Genome browser
AA seq
1177 aa
AA seq
DB search
MSQGASTPPFSHTLIAPEFPEKPADHRTWGQLHGSSDALAICESARAHQGLTLVITRSTS
DAIRLEQAMRFFLGLPPEEDGAAITSDGLELLSLPDWETLPYDLFSPHQDITSRRIRTLH
RLPATSHGVLVVPARTLMHRLPPVNYLQGNTLLLEIGQSLDINSWRMQLESAGYRHSENV
YEHGEYAVRGAILDIFPMGSNLPYRIDLFDNEIETLRTFDPETQRSIDRIERIELLPAYE
FPWHKEARSGFRSRWFEQFPNADKDIPIYQDVTHSITPPGIEYYLPLFFDETATLFDYLP
GATHVFTAAGLNDAVSLFDTETRTRYEDRRHDRLRPILPPTRLFLQQDELFRHLKAFPRV
TITNETASGAGAENCPTDSLPDIAMDGRAADPATRLKRFLDEFSGRVLICAESSGRREAL
IENLGNHQLKPQPRENWQVFLEDKQCPLGITIAPMEQGLVLRDRQVALITETALFGQRVL
QRRRREKPTETDDAGYRDLSELRIGAPVVHIDHGVGRYRGLETITLDGESNEFLMLEYAG
GSKLYVPVSSLHLISRYAGNDAEHAPLHKLGTERWSNAKQKALEKIRDTAAELLDVYARR
EARKGYSFDDPKEAYRAFAAGFPFEETPDQEVAIQSVIEDMTSERPMDRLVCGDVGFGKT
EVAMRAAFIATYSGKQVAVLVPTTLLAQQHYESFRDRFSDTAVNVELLSRFRSTAQTRKA
MEAIEDGRADIVIGTHKLLQGDIRFKNLGLVIIDEEHRFGVQQKEKLKALRAEVDMLTLT
ATPIPRTLNMAMGHLRDLSIIATPPARRLSVKTFVRQRDDAMVKEAILREILRGGQVYFL
HNDVATIEKTAEDLRRLIPEARVGVAHGQMRERELEQIMSDFYHKRFNVLVCSTIIETGI
DIPSANTIIIERADKFGLAQLHQLRGRVGRSHHQAYAYLLTPPPKSITTDAKKRLDAISE
SQDLGAGFMLASHDLEIRGAGELLGEEQSGQIESIGFTLYMQLLDEAVKAIREGRTPNAD
LPLSHGTEMNLRIPALIPEDYLPDVHNRLMLYKRIASVQSKEALKELQVEMIDRFGLLPE
PAKNLVHQTELRLQAEALGIVKVDAGKEWARLEFGSSTPVDPLVLVKKVQSAPDQYRLEG
ASTFRFRLKDTSTSGKLNGVSGMLGELAPAQTAATAS
NT seq
3534 nt
NT seq
+upstream
nt +downstream
nt
atgagccaaggtgcatccacacccccgttttcccacacgctgatcgctccggagtttccg
gaaaagccggcagaccaccgcacgtggggccaactgcatggcagcagcgacgctctggcc
atttgcgagagtgcgcgcgctcaccaggggctgactctggtgatcactcgcagcaccagt
gatgcaattcgcctggaacaggcgatgcgatttttcctggggctgccgccggaagaggac
ggtgcagcgatcaccagcgatggcctcgaattgctgtcactgccggattgggaaactctg
ccctacgaccttttctcgccgcaccaggacatcacctcccggcgcattcgcactctgcac
cgactgcctgccaccagtcacggcgtgcttgttgtgccggcaagaaccctgatgcaccgc
cttccgccggtcaattaccttcagggcaacacccttctgcttgaaattggccagtcgctg
gacataaattcctggcgcatgcagcttgagtcggctggttaccggcattcagagaacgtc
tatgaacacggcgaatacgcagtccgcggtgcaatcctcgacatatttccaatgggctcc
aacctgccctaccgcattgacctgttcgacaatgaaattgaaaccttgcgtacttttgac
ccggagacacagcgttcgatcgaccggatcgagcgcatcgaactgttgccggcctatgaa
ttcccgtggcacaaggaggctcgctccgggtttcgcagtcgatggtttgaacagttcccg
aatgctgacaaggatatccccatctaccaggatgttacccacagcatcacaccgccgggg
atcgaatattatctgccgttgttcttcgatgaaacggcaaccctttttgactacctgccc
ggggccactcatgtattcacagccgcaggtctcaacgatgctgtcagcctcttcgatact
gaaacgcgaacccgctatgaagacaggcgccatgatcgcctgcggcccatcctgcctccc
accaggctatttcttcagcaggatgaactgttccgacacctgaaagcctttcccagggta
accatcacaaacgagacggcgagtggagcaggtgcggaaaactgcccgactgacagcctt
ccggacatcgccatggatggccgggcagcagacccggccacccggctgaagcgttttctt
gacgaattcagtggccgggtgctgatctgcgcagagtcctcaggccgcagagaagccctg
atcgaaaaccttggcaatcatcagctcaaaccacagccccgcgagaactggcaggtgttc
cttgaggacaaacagtgcccactcggtattaccatcgcaccgatggagcaagggttagtg
ctcagagatcggcaggtggcgctgatcaccgaaacagctctgtttggccagcgcgtgctg
cagcgccgacgcagggaaaagccaactgaaacggacgatgctggctaccgggacttgtct
gagcttcggattggtgcgcctgtggtgcacatcgatcacggcgtaggccgttaccggggg
ctggaaaccattaccctcgatggcgagtccaacgagttcctcatgcttgagtatgccggg
gggtcaaagctctacgttccggtttccagcctgcacctgatttcccggtatgcaggaaac
gatgccgaacacgcgccgctgcacaagctaggcactgagcgctggagcaacgcgaaacaa
aaagcactggaaaagattcgcgacactgctgccgagcttcttgatgtctatgcgaggcgg
gaagcccgaaaaggttacagttttgatgatccgaaagaggcctatcgtgcctttgccgct
ggatttccattcgaagaaacgccggaccaggaagtggcaattcagtcggttattgaggac
atgaccagtgagcgcccaatggaccgactggtatgcggcgacgtgggcttcggtaaaacc
gaggtcgccatgcgcgcagctttcatagcgacatactccggtaaacaggtggccgtgctg
gtacccacaactctgcttgcccagcaacactatgaatccttccgggaccggttctccgat
accgccgtcaatgtcgagttgctcagccgtttccgcagcaccgcccagacccgtaaggca
atggaagcgatcgaagacggcagggccgatattgtgatcggaactcacaaacttcttcag
ggcgatatcagattcaagaacctgggccttgtcatcatcgatgaggaacaccgcttcggt
gtccagcagaaggagaagctgaaagccttgcgggcggaagtggacatgctgaccctgacg
gcgaccccgattccacgaaccctgaacatggctatgggccacctgcgggatctctccatc
attgcgacaccgccggctcgccggctatcggtaaagacgttcgtccgccagcgggatgat
gccatggttaaagaagccatcctccgggaaattctgcgaggtggccaggtgtacttcctg
cacaatgatgtcgccaccatcgaaaaaaccgctgaagacctgcgtcgccttatccctgag
gcccgtgttggcgtcgctcacgggcagatgcgcgagcgggaactggaacagataatgtcg
gacttttaccacaagcgcttcaacgtgctggtgtgttcgaccatcatcgaaaccgggatc
gacatccccagcgccaacaccatcatcattgagcgcgcagacaagtttgggttggcccaa
cttcatcaactccgcggccgggtcgggcgttcgcatcaccaggcgtacgcctacctgctg
acccctcccccaaaatccatcaccacggatgcgaaaaagcggctggatgcgatctccgag
tcacaggacttgggagcaggctttatgctcgcctcccacgacctggaaatccgcggcgca
ggtgaactgctcggcgaagagcagagtggtcaaatcgagagcattggcttcacgctttat
atgcaactcctcgacgaagcggtgaaagccattcgcgaggggcggactccgaacgcagac
ctgcccctgagccacggcaccgaaatgaacctgcgaatcccggcccttattccggaggat
tacctgcccgatgtccataatcgcctcatgctttacaaacgcatcgccagcgtacagagc
aaagaagcgttaaaagaacttcaggttgagatgattgatcgcttcggtttattgcctgaa
ccggcaaaaaatctggtccaccaaaccgagcttcgcctgcaagcagaggcgctgggcatt
gtaaaggtagatgctggcaaggaatgggcacgactggagtttggcagctcgactcccgtt
gacccactggtcctggttaagaaagtgcaatccgcgccagaccaataccgccttgagggc
gcgagcacctttcgttttcggctgaaggacacgtctaccagtggtaaactcaacggcgtt
tccggaatgcttggcgaactggcacctgcgcaaacggctgcgaccgcctcatga
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integrated database retrieval system
