Mycobacterium stephanolepidis: MSTE_01111
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Entry
MSTE_01111 CDS
T05257
Symbol
mfd
Name
(GenBank) transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mste
Mycobacterium stephanolepidis
Pathway
mste03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mste00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
MSTE_01111 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mste03400
]
MSTE_01111 (mfd)
Enzymes [BR:
mste01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
MSTE_01111 (mfd)
DNA repair and recombination proteins [BR:
mste03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
MSTE_01111 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
AAA_22
RecG_dom3_C
MFD_D3
Motif
Other DBs
NCBI-ProteinID:
BAX96443
UniProt:
A0A1Z4EU38
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All DBs
Position
1094519..1098172
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AA seq
1217 aa
AA seq
DB search
MTVTAPPLAGVIRTALRDPAFDVLAPALAAKTGLDLTAPSCARPLVVTGMADASDAPVLV
VTATTREAQDLAAELRDVYGDAVTLLPSWETLPHERLSPGVDTVGARLQVLHRLAHPEDS
RMGPALRVVVTTVRSLLQPMSPELFDLEPVELTVGAESEFDGLIARLVELAYTRVDMVAG
RGEFAVRGGILDVFSPTADHPVRVEFWGDEVSEMRYFSVADQRSIPELQVTSVLAMPCRE
LLLTEQVRTRAAELAAAAGDSGSAEGEHRLGTGLGEMLAKLADGICVDGMESLLPVLHSG
ELTILVDHLPEGTPVLICDPEKVRTRAADLERTGREFLEASWSVAAIGADAPIDVAALAD
SGFRELVDVKHAADESGHPWWSLSPLSMGDDQAIDLAVRPSPSSRGHKEGAAEIFAMLRA
HVMTGGRAVVVAAGAGTTHRIIEQLAETETPAKLLEPRAEPVEGVVGVLRGHLTDGVVLA
GANIVIVTETDLTGSRVAATDGKRLPAKRRNQVDPLALAAGDLVVHDQHGIGRFVEMVER
TVGGARREYLVLEYASGKRGAAAGGQSDRLYVPMDSLDQLSRYVGGESPGLSRLGGSDWA
NTKTKARKAVREIAGELVALYAARQAAPGHAFAADTPWQREMEDAFGFVETVDQLTAITE
VKSDMEKPVPMDRVVCGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFTS
RTAGFPVKVAGLSRFTDPATSKLVIEGMADGSVDIVIGTHRLLQTAVRWKDLGLVIVDEE
QRFGVEHKEHIKALRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVG
PHDDKQVAAALRRELLRDGQAFYVHNRVISIDRAAARIRDLVPEARVVVAHGQMPEELLE
RTVEGFWNREYDILVCTTIIETGLDISNANTLIVERADIFGLSQLHQLRGRVGRSRERGY
AYFLYSPEVPLTETAYDRLSTIAQNNDLGAGMAVAMKDLEIRGAGNVLGVEQSGHVAGVG
FDLYVRLVGEAVEAYRAAADGKTVQTAEEPKEVRIDLPVDAHLPTDYIGSDRLRLEAYRR
LAAAGDAAQIGAAVEELVDRYGPLPLPVQRLVAVASLRLLCREMEITDLSVVGTNIRIQP
LPLLDSAQLRLKRLHPAAQYRATTSVVQVPIPRAGDGGVGSERIRDLELVHMIVDLLLAL
SGRPAGSVDITPVEVSK
NT seq
3654 nt
NT seq
+upstream
nt +downstream
nt
atgactgtgactgccccgcctctcgccggggtgatccggacagccttgcgggatcccgcg
ttcgatgttcttgccccggccctcgccgccaagaccggccttgatctgacggcaccgtcg
tgtgcccgcccactcgtcgtcaccggtatggccgatgcgagcgacgcgcctgtcctggtg
gtgacggccaccacccgggaagcgcaagatctggccgccgagctgcgcgacgtgtacggc
gacgcggtcaccctgctgccgtcatgggagacgcttccgcacgaacggctgtcacccggc
gtcgacaccgtgggtgcccgattgcaggtgctgcaccggctcgcccatccggaggattcc
cggatggggcccgcactgcgggtggttgtcacgacggttcgttcactgttgcagccgatg
tctcccgagctgttcgatctggagccggtggagctcaccgtgggtgccgagtcggaattc
gacgggctgatcgcgcgcctggtcgagctcgcgtacaccagggtggacatggtggccggc
cgcggtgagttcgcggtgcgcggtggcattctcgacgtcttcagtcccaccgcagaccat
ccggtgcgtgtggagttctggggcgacgaggtcagcgagatgcgctacttctccgtcgcc
gaccagcgatcgatccccgagctgcaggtcacctccgtgctcgcgatgccctgccgcgaa
ctgctcctcaccgaacaggtgcgcacgcgagcggccgagctcgcggcggcggcgggagac
tccggtagtgccgagggcgagcaccggctcggcaccgggctgggggagatgctggccaag
ctggccgacggaatctgcgtcgacggaatggaatcgctactgcccgtactgcattcgggt
gagctgaccatactggtggaccacctgcccgagggcactcccgtactgatctgcgatccc
gagaaggtgcgcacccgggcggcggatctggagcgcaccggccgggagtttctggaggca
tcctggtcggtcgccgcgatcggcgccgatgcgccgatcgatgttgccgcgctggcagac
tcgggatttcgggagcttgttgacgtcaagcacgcggcagacgaaagcggacatccgtgg
tggtcactgagcccgctcagcatgggcgacgatcaggcgatcgatctcgcggtacggcca
tcgccgtcctcgcgcggccacaaagagggtgcggcagagatcttcgcaatgctgcgcgcc
cacgtgatgacgggcggacgggccgtggtggtggccgccggtgcgggcaccacccaccgg
atcatcgagcagctggccgaaacggaaacgccggcaaagctgttggagcccagggcggag
cccgtcgagggtgttgtcggagtgctgcgcggccacctcaccgacggtgtggtgctcgcg
ggggccaatatcgtcatcgtcaccgagacggacctcaccggcagccgagtcgcggccacc
gatggcaagcggttacccgccaagcgccgcaaccaggttgacccgctggcccttgccgcc
ggcgatctggttgtgcacgaccagcacggtatcgggcgattcgtggagatggtggaacgc
accgtcggtggcgcccgtcgcgagtatctggtgctcgagtatgcatccggtaagcgtggc
gccgccgccggtgggcagagcgatcgcctgtacgtgccgatggactccctcgatcagctg
tcccggtacgtgggtggcgaatcgcccggcctgagccgtctcggcggcagcgactgggcc
aatacgaagaccaaggcgcgcaaggccgttcgcgagatcgcgggtgagcttgtggcgctg
tacgcggcgcgccaggccgctcccggacatgccttcgcggcggacactccgtggcagcgc
gagatggaagacgccttcgggtttgtcgagacggttgatcagctgaccgccatcaccgag
gtgaaatccgatatggagaagccggttccgatggaccgggtggtgtgcggcgacgtgggc
tacggcaagaccgagatcgcggtacgcgcggcgttcaaggccgtccaggacggtaagcaa
gtcgctgtgctggtgcccacgacgctgctggccgatcagcatctgcagacgttcaccagt
cgcaccgcgggattcccggtgaaggtggcgggcctgtcacgattcaccgaccccgccacc
tcgaagctggttatcgagggaatggccgatggctcagtcgatatcgtcatcggcacgcac
cggctgctgcagaccgcggtgcggtggaaggacctcggtctggtgatcgtcgacgaggag
cagcgattcggcgtcgaacacaaggaacacatcaaggcgctgcgcacccatgtcgacgtt
ctgaccatgagcgccaccccgattccccgcaccctggagatgagcctggcgggcatccgg
gagatgtcgaccatcctgaccccgcccgaagagcgttaccccgtgctcacctacgtcggt
ccgcatgacgacaaacaggtggcggccgccctacgacgtgagctgctgcgcgacggtcag
gcgttctacgtgcacaaccgggtgatctccatcgatcgggccgccgcgcgcatacgcgat
ctggttcctgaggccagagtcgttgtcgcgcatggtcaaatgcctgaggaactgcttgag
cgcaccgtcgaggggttctggaaccgcgagtacgacatcctggtgtgcaccaccatcatc
gagacggggctggacatctccaacgccaacaccctgatcgtggagcgggcggatatcttc
gggctgtcgcagctgcaccagctgcgcgggcgcgtcggtcgcagccgtgagcgcggctac
gcctacttcctgtattcgccggaggtgccgctgaccgagaccgcatacgacaggctctcg
actatcgcgcagaacaacgatctgggtgccggcatggccgtggccatgaaggatctggag
atccgtggcgcgggcaatgtgctcggtgtcgagcaatccggacacgtcgccggggtgggt
ttcgatctgtacgtccggctggtcggcgaggctgtcgaggcgtatcgcgcggcggccgac
ggcaagacggtgcagaccgccgaggagcccaaggaggtgcgtatcgatctgccggtcgat
gcgcacctgcccacggactacatcggtagcgatcggctgcgcctggaggcataccgcagg
ctggcggcggccggggacgccgcgcagatcggcgcggcggtcgaggagctcgtcgaccgt
tacggtccgctgccgcttccggtgcagcgactggtcgcggtggcctcgctgcgtttgctg
tgtcgtgagatggagatcaccgatctttcggtggtcggtaccaacatccgaatacagccg
ttgccgcttctggactcggcgcaattgcggctcaaacgtttgcatccggcggcgcagtat
cgcgcgacgacttccgttgtgcaggtgcctatcccgcgcgccggtgacgggggtgtgggt
tcggagcgcatccgcgacctggagctggtgcacatgatcgtcgatctgctgctggcgttg
tcggggcgtcccgcgggcagtgttgatataacaccagtggaggtgagcaaatga
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