KEGG   Methanoculleus submarinus: OH143_03575
Entry
OH143_03575       CDS       T08553                                 
Name
(GenBank) ATP-dependent DNA ligase
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
msum  Methanoculleus submarinus
Pathway
msum03030  DNA replication
msum03410  Base excision repair
msum03420  Nucleotide excision repair
msum03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:msum00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    OH143_03575
   03410 Base excision repair
    OH143_03575
   03420 Nucleotide excision repair
    OH143_03575
   03430 Mismatch repair
    OH143_03575
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:msum03032]
    OH143_03575
   03400 DNA repair and recombination proteins [BR:msum03400]
    OH143_03575
Enzymes [BR:msum01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     OH143_03575
    6.5.1.6  DNA ligase (ATP or NAD+)
     OH143_03575
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     OH143_03575
DNA replication proteins [BR:msum03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    OH143_03575
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     OH143_03575
DNA repair and recombination proteins [BR:msum03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     OH143_03575
   NER (nucleotide excision repair)
    Other NER factors
     OH143_03575
   MMR (mismatch excision repair)
    Other MMR factors
     OH143_03575
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase mRNA_cap_enzyme
Other DBs
NCBI-ProteinID: UYU19179
LinkDB
Position
complement(714826..716472)
AA seq 548 aa
MQFLEFAQVCEHLEGTPGRLDMIEQVAAVLPRLDDEELPVFVRFVMGRVFPDWSTKKLGV
GPNLLYDAVAYVVGTKRETVREAINTTGDVGLAVEGLLARKEQTSFFIQELDLLDVYREL
ERMAAAEGQRSQREKLRVAQGLFGNARPLEGRYLARLLLEELRIGMGEGNVRDAVAKAFE
LDVRLVEHAHQALNDLGEVALLARRDPDALSGVTIEPFRPVKMMLAQAGTIAAQIEDHGE
VAVEYKYDGSRFQFHKVGDVCRIYSRRLEDVTESLPDIANLLLEATDHDVILDGEAVAVR
DGKPMPFQYVIRRFRRKHEVDSMMEKIELVPMVFDILYLDGETLMDRPLAERRKALDEVL
GAHVAPQFPATDAAAAEAIYAEALDLGHEGVMVKVLDSPYTPGVRGRLWVKVKPGVETLD
LVVVGAEWGEGRRAGTFGSFLLAVQDQGRLLPVGKVATGITDEVLAELYALFKDRVIARS
GKEVTLEPEVVFEVGYSEIQTSPNYESGYALRFPRFVRVREDKSVDETETLDSLAERYGR
QRNGQGSL
NT seq 1647 nt   +upstreamnt  +downstreamnt
atgcagtttctggagttcgctcaagtctgcgagcaccttgaagggacccccgggcgcctc
gatatgatcgagcaggtcgccgccgtcctcccccggctcgatgacgaggagcttcccgtc
ttcgtccggttcgtcatgggcagggtctttcccgactggagcaccaaaaaactcggcgtg
ggcccgaaccttctctacgacgccgtggcctacgtcgtcgggacgaagcgggagaccgtc
cgcgaggcgatcaacacgaccggggacgtgggtctcgccgtcgaggggctccttgcacgg
aaggagcagacatcgttcttcatccaggaactcgacctcctcgacgtctaccgggaactc
gagcggatggcggccgccgaaggacagcggtcgcagcgggagaaactccgcgtggcgcag
ggcctcttcgggaacgcccggccgctcgaggggcgatacctcgcgcggctgctgctcgag
gagctccggatcgggatgggggaagggaacgtccgcgacgccgtcgcgaaggcgttcgag
cttgacgtccgcctggtcgagcatgcccaccaggcgctgaacgatctcggggaggtcgcc
ctccttgcccggcgcgaccccgacgcgctctccggtgtgacgatcgagccgttccggccg
gtgaagatgatgctcgcgcaggcgggaaccatcgccgcccagattgaggatcacggcgag
gtggcggtcgagtacaagtacgacgggagccggttccagttccacaaggtgggcgatgtc
tgccggatctactcgcggagactggaggacgtcacggagagcctccccgacatcgcgaac
ctcctcctggaggcgaccgaccacgacgtcattctggacggggaagcggtcgccgtccgc
gacgggaagcccatgccgttccagtacgtgatccggcggttccggcgcaagcacgaggtg
gactcgatgatggagaagatcgagctcgtgccgatggtcttcgatatcctctacctggac
ggcgagacgctgatggatcgccccctcgcggagcggcggaaagccctcgacgaagtgctc
ggcgcacacgtcgctccgcagttcccggccaccgacgcggccgcggcggaggcgatctac
gccgaagccctcgacctcgggcacgagggcgtgatggtgaaggttctcgactcgccctac
actcccggcgtccggggccgcctctgggtgaaggtcaaacccggcgtcgagacgctcgac
ctcgtggtcgtgggggcggagtggggcgagggccggagggccgggacgttcggctcgttc
ctgctcgcggtgcaggaccagggccggctcctcccggtcgggaaggttgcgaccgggatc
acggacgaagtcctcgcggagctctatgccctcttcaaggaccgggtgatcgcccgctct
ggaaaggaggtgacgctcgagccggaggtggtcttcgaggtgggctactccgagatccag
acgagcccgaactacgagagcggttacgcgctccggttcccgcggttcgtccgggtgcgc
gaggacaagagcgtcgacgagaccgagaccctcgactccctcgcggaacgctacgggcgg
cagaggaacgggcagggatcactatag

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