Microbacterium suwonense: GCM10025863_15880
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Entry
GCM10025863_15880 CDS
T09270
Symbol
mfd
Name
(GenBank) transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
msuw
Microbacterium suwonense
Pathway
msuw03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
msuw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
GCM10025863_15880 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
msuw03400
]
GCM10025863_15880 (mfd)
Enzymes [BR:
msuw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
GCM10025863_15880 (mfd)
DNA repair and recombination proteins [BR:
msuw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
GCM10025863_15880 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
CarD_TRCF_RID
Helicase_C
ResIII
RecG_dom3_C
MFD_D3
Motif
Other DBs
NCBI-ProteinID:
BDZ38974
LinkDB
All DBs
Position
complement(1494454..1497942)
Genome browser
AA seq
1162 aa
AA seq
DB search
MTVPGILRALEEANLYRDALTWAKTDAEISAVDGLDAPIIAGLLRKRAQEGLPASVLVVT
PTGRRAESVAAALADYLADAEILTFPAWETLPHERLSPSPDTVGQRLAALRRIATWTGEK
PLVVVASVRAALQPVAANLGDAVPLQLRVGSRGLELEQVVEQLVERAYSRVDMVSRRGEF
AVRGGILDVFPPTADHPARVEFFGDEIDQIRAFSVADQRSLPGDVASVELPASRELLLTA
DVRERAAGLIGRFPAISGMLEKMAEGIPVEGMESLLPIVAGPLVTLAEYLPTGSAAAIVD
PERASARAQNLGETNREFLEAAWSAATAGAAAPIDASTGRDAGLDAGDFVSIARLREVIR
EREGVWWRLSPFAVDDTDAENIDSSIIPSFHGNVDGAISFIEERLREAWRVVVIASGQGL
VERARDVLSDRGLAARVLDDLVDPPEGGVASLVRGSVESGFQVPEAKLAVLTDSEFYGRT
IGGDQRAVRKLASRRRNVVDPLQLKQGDYVVHTTHGIGRFVEMTKREVSSGGRNAVKTTR
EYLVLEYAPSKRGYPGDKLYVPTDQLDLLSKYVGGEAPVLSKMGGGDWSAAKGKARRAVR
DIAVELVKLYSARMNAKGHAFGPDTPWQRELEEAFPFAETQDQLQTIDEIKADMERPVPM
DRLLSGDVGFGKTEVAVRAAFKAIQDGKQVAMLVPTTLLVKQHMETFTERFAGFPVQVRA
LSRFQTDKEARLTLQGLLDGSVDMVIGTHRILTDQVIFKDLGLMIIDEEQRFGVEHKDKL
KKMKTNVDILAMSATPIPRTLEMAVTGIREMSTLQTPPEDRHPILTFVGPRSDKQMAAAI
RREILREGQVFFVHNRVQSIQRVASELAELVPEARIAVAHGRMGEHQLEQVVDDFWERKY
DVLVSTTIVETGLDISNANTIIIDRADKYGLSQLHQLRGRVGRGRERAYAYFLYDDSKPL
SETAADRLQTIAVNNELGSGTQVALKDLELRGAGNMLGAEQAGHIAGVGFDLYLRMIGEA
VATFRGDETSSDVELRLELPVEARIPEDYIDSERLRLEAYQKLSSAATVAAAEDAIDLVA
EELVDRYGALPDEVQTLVTVARLRRRAARAGLTDVVAMGSNLRIAPARFEDSMKVRLQRL
YPKAKLLGGERRWSCRCRSMRI
NT seq
3489 nt
NT seq
+upstream
nt +downstream
nt
gtgactgttccggggattctgcgcgccttggaagaggcgaacctgtaccgtgacgccctc
acctgggcgaagacggatgccgagatctcggcggtggacgggctggatgcgccgatcatc
gccgggctgctgcgcaagcgtgcgcaggaggggctgccggcatccgtgctggtcgtcact
cccaccgggcggcgcgcggaatcggtcgcggcggcactggccgactatctggcggatgcc
gagatcctcaccttccccgcctgggagactctgccgcacgagcggctgagccccagtcct
gacacggtcgggcagcggctggcggcgctgcgccgcatcgccacctggaccggggagaag
ccgctggtggtcgtcgcctcggtgcgtgccgcactgcagccggtggccgcgaatctcggc
gatgcggtgccgctgcagctgcgcgtcggctctcgggggctggagctcgagcaggtcgtg
gagcagctcgtcgagcgcgcctactcgcgcgtggacatggtctcgcgccgcggcgagttc
gccgtgcgcggagggatcctcgacgtcttcccgcccacggccgaccaccctgcacgggtg
gagttcttcggcgacgagatcgaccagatccgggccttctccgtcgccgatcagcgctcg
ctgcccggcgatgtggcatccgtcgagctgccggccagccgcgaactgctgctcaccgcc
gatgtgcgtgagcgtgcggcagggctgatcggacggttcccggcgatctccgggatgctc
gagaagatggccgagggcatccccgtggaggggatggagtcgctgctgcccatcgtcgcc
ggtccgctggtgacccttgcggagtacctgccgaccggatcggccgcagccatcgtcgac
cccgagcgggcgtcggcccgcgcgcagaacctcggcgagaccaatcgggagttcctggag
gcggcgtggagcgccgcgaccgccggtgccgcggcacccatcgacgcgtcgacaggacgc
gatgccgggctggacgccggagacttcgtctccatcgcgcgcctgcgtgaggtcatccgt
gagcgcgagggcgtctggtggcggctgagtccgttcgccgtcgacgacacggatgccgag
aacatcgactcctcgatcatcccgtccttccacggcaacgtcgacggcgcgatctccttc
atcgaagaacgtctgcgtgaagcctggcgcgtcgtggtgatcgcctccggccaggggctg
gtcgagcgtgctcgcgacgtgctcagcgaccgcggactcgccgcccgcgtgctggacgac
ctcgtagacccgccggagggcggtgtggccagcctggtgaggggctcggtggagtccggc
ttccaggtgcccgaggcgaagctcgccgtgctcaccgacagtgagttctacgggcgcacg
atcggcggcgatcagcgggcggtgcgcaagctcgcctcgcggcggcgcaacgtcgtcgac
ccgctgcagctcaagcagggtgactacgtggtgcacaccacgcacggcatcggccggttc
gtggagatgaccaagcgcgaggtgtcctccggcggacgcaacgccgtcaagaccactcgc
gagtacctggtgctggaatacgcgccgtccaagcgcggttacccgggcgacaagctgtac
gtgcccacagatcagctcgacctgctctcgaagtatgtcggcggcgaggcgcccgtgctc
tcgaagatgggcggcggcgactggtcggccgccaagggcaaggcgcgcagggcggtgcgc
gacatcgcggtcgagctggtgaagctgtattcggcgcggatgaacgcgaagggacatgcg
ttcggcccggacacgccctggcagcgtgagctggaggaggcgttcccgttcgccgagacc
caggatcagctgcagacgatcgacgagatcaaggccgacatggagcggccggtgccgatg
gatcggctgctctcgggcgacgtcggcttcggcaagaccgaggtcgccgtgcgggcggcg
ttcaaggcgatccaggacggcaagcaggtcgccatgctcgtgccgaccacgctgctcgtc
aaacagcacatggagacgttcaccgagcgcttcgccgggttccccgtgcaggtgcgggcg
ctttcgcgcttccagaccgacaaagaggcccggctcaccttgcaggggctgctcgacggc
tcggtcgacatggtcatcggcacgcaccgcatcctcaccgatcaggtgatcttcaaggat
ctgggtctgatgatcatcgacgaggagcagcggttcggggtcgaacacaaggacaagctc
aagaagatgaagaccaacgtcgacatcctcgccatgagtgccaccccgattccgcgcacg
ctggagatggcggttaccggcatccgcgagatgtcgacgctgcagacgccgccggaggac
cggcatccgatcctcaccttcgtcggcccgcgcagcgacaagcagatggccgctgccatc
cgacgcgagatcctgcgcgaaggacaggtgttcttcgtgcacaaccgggtgcagtcgatc
cagcgcgtggccagtgagctggccgagctcgtgcccgaggcacgcatcgccgtggcgcac
ggccgaatgggcgagcaccagctcgagcaggtcgtcgacgacttctgggagcgcaagtac
gacgtgctcgtctcgaccacgatcgtcgagaccgggctggacatctccaacgccaacacg
atcatcatcgacagggccgacaagtacggcctctcgcagctgcaccagctgcgagggcgg
gtgggtcgcggccgcgagcgcgcctacgcgtacttcctctacgacgactccaagccgctc
agtgagactgccgcggatcggctgcagaccatcgcggtgaacaacgagctggggtcgggc
acgcaggtcgcgctgaaggacctggagctgcgcggtgcgggcaacatgctcggcgcggag
caggccgggcatatcgcgggcgtcggcttcgacctgtatctgcgcatgatcggcgaggcc
gtggcgaccttccgcggcgacgagacgtcgtcggatgtcgagctgcggctcgagctgccg
gtggaggcacgcatccccgaggactacatcgacagtgaacggctgcggctggaggcctac
cagaagctgtcgtccgcagccacggtggcggctgccgaggatgccatcgacctggtcgcc
gaagagctcgtcgaccgctacggtgcgcttccggacgaggttcagacgctggtgacggtc
gcacggctgcgccgccgggcggcgcgtgcagggttgacggatgtcgtggcgatgggatcg
aacctgcgcatcgccccggcccgcttcgaggactccatgaaggtgcggctgcagcggctg
tatcccaaggcgaagctgctgggcggggagaggcgctggtcgtgccgatgccggtcgatg
cggatctga
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