Malus sylvestris (European crab apple): 126582416
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Entry
126582416 CDS
T09027
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 42-like
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
msyl
Malus sylvestris (European crab apple)
Pathway
msyl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
msyl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
126582416
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
msyl03041
]
126582416
Enzymes [BR:
msyl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
126582416
Spliceosome [BR:
msyl03041
]
Complex A
U2 snRNP components
U2 related factors
126582416
Complex B
126582416
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
126582416
NCBI-ProteinID:
XP_050102517
LinkDB
All DBs
Position
9:5940528..5945593
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AA seq
1085 aa
AA seq
DB search
MVEGVKHKPRKERESKRISGHRDGEKEKNGERRHRGKDRDFKRDGDSSRSARDKLDRDER
DCDSSRSTRDKFCDSEDERYEVEKRHRGDRESGSHRRARDKEMGREKDKERGKREKVREK
ERDRDRKRRVRSDDVDEEEEEDVRESDRKRRRKDDKENAERVRERSNSRSDRHRDGRVES
PVKKSDEDDSVRKGTNPISEVVEEDLEDEQRKLDEEMEKRRRRVQEWQELRRKEKQAEGE
KHVEGDVDEHKSKKTWTLEGESDDEEETGMDLDGEAYLTDKEDGAVMEVDSENQTAAPAL
QDDEIDPLDAFMNSTVLPEVEKLANAAEQPVVAGEKGSNNSLGRIIPGEYSDSDYGDIEN
DDDPLEDEDDDEFTKRVTKTKVDKLSLVDHSKIDYEPFRKNFYIEVKEVSKMTPEDVGAY
RKQLELKIHGKDVPKPIKTWHQTGLTNKILEMIKKLDYEKPMPIQAQAVPIIMSGRDCIG
IAKTGSGKTLAYVLPMLRHIKDQPPVVAGDGPIGLIMAPTRELVQQIHSVINKFAKTLGL
RCVPVYGGSGIAQQIGELKRGAAIVVCTPGRMIDILCTNGGRITNLQRVTYLVVDEADRM
FDLGFEPQINRIVQNIRPDHQTLLFSATFPHQVEVLARKVLNKPVHIQVGGKSVVNKDIT
QFVEVRSENERFVRLLEILGEWYERGKILVFAKAHATCDTVLRDLLRHGYPCLSLHGNKD
QTDRESTISDFKSDVCNLLIATSLASRGLDVKGVELVINFDTPDHYEDYVHRVGRTGRAG
KKGCAITFISEEDAKYAPDLVKALELSEQAVPDDLKSLADGFMAKIKQGLEQAHGTGYGG
SGYKFNEEEDEARKAAKKAQAKEYGFEDDKSDSEDEDDGVRKAGGDISQQAALAQISAIA
AASIGGTASVQTPVSTAQLLPNGGLPVSLPSVLGGATLPGTAAVLPGMGLNLVGHEGAAR
AAAIAAAMNLQHNLAKIQADAMPEHYEAELEINDIPQNARWKVTHKETLGPISELTGAAI
TIRGQYFPPGKVPGPGDRKLYLFIEGPTEQSVKRGKSELKRKLEEIMNQSLSLPSGAQQR
RYQVI
NT seq
3258 nt
NT seq
+upstream
nt +downstream
nt
atggtagagggggtcaaacataaacctaggaaggagcgagaatcgaaaaggattagcggt
catcgagatggcgaaaaggagaagaatggagagaggagacatcggggaaaagatagagat
tttaagagagatggtgattctagtcgttccgcgagagacaagttagatagagatgagaga
gattgtgattctagtcgttccacgagagacaagttttgtgattctgaggacgagaggtat
gaggtagagaagcggcatcgaggagatagggagagcggtagtcataggagggctagagat
aaagagatggggagggagaaagacaaagagagggggaaaagagagaaggttagagagaag
gaaagggacagagatcgaaagagaagggtgcggagtgatgatgtagatgaagaggaggag
gaggatgttagggagagtgataggaagcggcgtaggaaagatgacaaggagaatgcggag
agagtgagggaaaggagtaacagcaggtcagatagacatagggatggtcgagttgagagc
ccggtaaagaagagtgatgaagatgattcagttaggaaagggacgaatccgatctctgag
gtggtggaggaggatttagaggatgagcagaggaaattagatgaggaaatggaaaagcgg
aggaggagagttcaggagtggcaggagttaagaagaaaggagaaacaagctgagggagag
aagcatgtggaaggggatgttgatgaacacaagtctaaaaagacctggacacttgaggga
gaatctgacgatgaagaagagacaggtatggaccttgacggagaagcctatctcactgat
aaagaggatggagccgtcatggaggttgattctgagaatcaaacagctgcacctgctttg
caggatgatgaaattgatccattagatgcttttatgaattctacggtgctgcctgaagtt
gagaagctggccaatgctgcagaacaaccagtagttgctggtgaaaaaggttcaaacaat
tctttgggcagaataattcctggggagtattctgattcagattatggggacattgagaat
gatgatgatcccttagaagacgaagacgatgatgagttcacaaaaagggtgacaaagaca
aaagtcgataaactttctctagtggatcactcaaagatagattatgaaccattcaggaaa
aatttctacattgaggtgaaggaggtctcaaaaatgaccccagaagatgtgggtgcatac
cgaaaacaattggaattgaagatacatggtaaggatgtcccaaagcccattaagacctgg
caccaaactggacttacaaacaaaatcttggaaatgataaagaagcttgactatgaaaag
ccaatgccaattcaggctcaggcagtgcctataattatgagtggacgagactgcattggc
attgcaaaaactggctcaggcaaaacccttgcatatgtgctgccaatgctgaggcatatc
aaggaccagccacctgtggtagctggagatgggcctattggccttataatggcaccaaca
agggagcttgttcagcagattcacagtgttataaacaagtttgccaagacactgggtctc
aggtgtgtgcctgtatatggaggttctggtattgcccaacagattggggagttgaagcgg
ggtgctgcaattgtcgtctgtacccccggtaggatgattgacatactttgtacaaatgga
gggaggataacaaatctgcagagagtaacttacttggttgtggatgaagctgatcgaatg
tttgacttgggttttgaacctcaaatcaatcgaattgttcagaatattcggccagatcat
cagactctattgttttctgccacgttccctcaccaggttgaagtcttagcacgtaaagtc
ttaaacaaacctgtgcatatacaggttggtggtaagagtgttgtaaacaaggacattaca
caatttgttgaagtgaggtccgaaaatgaaaggtttgttagattattagagatacttggg
gaatggtacgagagaggaaaaattctggtgtttgccaaagcacatgcaacgtgtgacact
gtgcttagggatctgcttaggcatggatatccttgtctctcgcttcatgggaacaaagat
caaacagatcgtgaatccaccatatctgattttaagagcgatgtgtgtaatttgttgatt
gcaactagtcttgcttctagagggttagatgtcaaaggggttgagctggtgatcaacttt
gatactccagatcactacgaggactatgttcaccgtgttggtcgtacaggccgagctggc
aagaaaggttgtgctataacgttcatctctgaggaagatgctaagtatgccccagatctt
gtcaaagcattggaactctctgagcaagctgttccagatgaccttaaatctcttgctgat
ggtttcatggcaaaaataaagcagggacttgagcaggcccacgggactggttacgggggc
agtggttataaatttaatgaagaggaagatgaagcaaggaaagcagcaaagaaagcacag
gccaaagaatatggttttgaagatgacaagtcagattcagaagatgaagatgatggtgtc
agaaaggctgggggtgacatttcacagcaggctgcccttgctcaaatatcagctattgct
gctgcctctattggtggtacggcttcagttcagacccctgtctctactgctcaactgctt
cctaatggtggattacctgtttctcttcccagtgtccttggtggtgcaacgttgccggga
acagcagccgttttgcctgggatgggtctgaatcttgttggacatgaaggggcagctcga
gcagcagcaattgcagctgccatgaatttgcagcataacctagcaaagattcaagctgat
gcaatgcctgagcactatgaagcagagttggaaataaatgatattccccagaatgctcga
tggaaggttacccacaaggaaactttgggccctatatcagagttgactggagctgccatt
actattaggggtcaatatttcccaccaggcaaggttccagggccaggagatcgcaagctt
tacctgtttattgagggtcctactgaacaatctgtcaagagaggtaaatcagaactaaaa
cgcaagttggaagaaatcatgaatcagtcattatcacttcccagcggcgctcagcaacgc
agatatcaagttatataa
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