KEGG   Malus sylvestris (European crab apple): 126587800
Entry
126587800         CDS       T09027                                 
Name
(RefSeq) cullin-4-like
  KO
K10609  cullin 4
Organism
msyl  Malus sylvestris (European crab apple)
Pathway
msyl03420  Nucleotide excision repair
msyl04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:msyl00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    126587800
  09124 Replication and repair
   03420 Nucleotide excision repair
    126587800
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:msyl04121]
    126587800
   03400 DNA repair and recombination proteins [BR:msyl03400]
    126587800
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:msyl04147]
    126587800
Ubiquitin system [BR:msyl04121]
 Ubiquitin ligases (E3)
  Multi subunit Ring-finger type E3
   Cul4 complex
    Cullin
     126587800
DNA repair and recombination proteins [BR:msyl03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Cul4-DDB2 complex
      126587800
    TCR (transcription coupled repair) factors
     Cul4-CSA complex
      126587800
Exosome [BR:msyl04147]
 Exosomal proteins
  Exosomal proteins of other body fluids (saliva and urine)
   126587800
SSDB
Motif
Pfam: Cullin Cullin_Nedd8
Other DBs
NCBI-GeneID: 126587800
NCBI-ProteinID: XP_050108833
LinkDB
Position
10:complement(36930716..36939163)
AA seq 834 aa
MSLMSHPNKRSSAINHSGTSSSSSSSSLNPSSAGPPMKKAKSQAVAGSLDPSKNGLHHHH
HHHPHTHPSQDPDNDAVFDPSSMSLDEDLKPDDPSPRGIAANLSRKKAQPPQPSTKKLVI
KLVKAKPTLPTNFEEETWAKLKSAISAIFLKKPDSCDLEKLYQAVNDLCLHKMGGSLYQR
IEKECERHIAAALQSLVGQSPDLVVFLSLVERCWQDLCDQMLMIRGIALYLDRTYVKQTP
NVRSLWDMGLQLFRKHLSLSPEVEHKTVTGLLRMIEKERLGEAVARTLLNHLLKMFTALG
IYSESFEKPFLECTSEFYAAEGMKYMQQADVPDYLKHVETRLHEEHERCLIYLDASTRKP
LVATAEKQLLDRHIPAILDKGFTLLMDGNRIEDLQRMHTLFSRVNALESLRQALSSYIRR
TGQGIIMDEEKDKEMVASLLEFKASLDTIWEESFFKNEVFCNTIKDAFEHLINLRQNRPA
ELIAKFLDEKLRAGNKGTSEEELEGMLDKVLVLFRFIQGKDVFEAFYKKDLAKRLLLGKS
ASIDAEKSMISKLKTECGSQFTNKLEGMFKDIELSKEINESFRQSSQARTKLPSGIEMSV
HVLTTGYWPTYPPMDVRLPHELNVYQDIFKEFYLSKYSGRRLMWQNSLGHCVLKADFPKG
KKELAVSLFQTVVLMLFNDAEKLSLEDIKDSTGIEDKELRRTLQSLACGKVRVLQKFPKG
RDVDDGDTFTFNDTFIAPLYRIKVNAIQMKETVEENTSTTERVFQDRQYQVDAAIVRIMK
TRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDKNNPQIYNYLA
NT seq 2505 nt   +upstreamnt  +downstreamnt
atgagtttgatgtctcaccccaacaaacgctcctcagcgatcaaccacagcggcacctcc
tcctcctcctcctcctcctctctcaacccttcttccgccggcccacccatgaaaaaggcc
aagtcgcaggcggtggccggttccctcgatcccagcaaaaatggcctccaccaccatcac
caccaccaccctcacactcacccgtcccaggaccccgataacgacgccgtattcgacccc
tcttccatgtccctcgacgaagatctcaagcccgacgacccctctccccgaggcatcgcc
gccaatttgtcccgcaaaaaggcgcagccccctcagccctctaccaagaagcttgtcatc
aagctcgtcaaagctaaacccacgttacccacaaattttgaagaggaaacatgggcaaag
ctgaaatcagctatttctgctatattcttaaagaaacctgattcttgtgacttggagaag
ctttatcaggctgttaatgatctctgcctgcacaagatgggaggaagtctttatcaacga
attgagaaggagtgtgaaaggcacatagctgcagcgctgcaatctttggttggccaaagc
ccagatttagtggtttttttatcacttgttgagagatgctggcaggacctttgtgaccag
atgttaatgattcgtggtatagctttatatcttgataggacatacgtgaaacaaactcca
aatgtgcgttcgttgtgggacatgggattgcagcttttccgcaaacacctttctctgtct
ccagaagttgagcacaaaactgtcaccggccttttaagaatgatcgagaaagaaagatta
ggtgaagcagtggctaggactctgcttaaccatcttttgaagatgtttacagctttagga
atctactcagaaagctttgagaagccatttcttgagtgtacttctgaattctatgctgct
gaaggcatgaaatatatgcagcaagcagatgttccggattacttgaagcatgtggagaca
aggttgcatgaagaacatgaaagatgtttaatctacctggatgcaagtacacgaaagcca
ttagttgcaacagcggaaaaacagcttttagatcgccatataccagctattctcgacaag
ggtttcacattgctgatggatgggaatcgcattgaggaccttcaaaggatgcacactctt
ttttccagagtcaatgcccttgaatcactaaggcaagcacttagctcatacatccggagg
acagggcagggcattatcatggatgaagagaaagataaagaaatggttgcttctcttttg
gaatttaaggcttctcttgacactatatgggaagaaagctttttcaagaatgaagtattc
tgcaacaccataaaggatgccttcgagcatttaattaatctccgacagaaccgacctgct
gagctgatagcaaagtttttggacgagaagcttcgtgctgggaataagggtacctctgaa
gaggaattggagggaatgcttgacaaagtcttggttttattcaggtttatacagggtaag
gacgtgtttgaagcattttataagaaagatcttgcaaaaaggctacttttgggaaagagt
gcttctattgacgcagagaagtctatgatttccaagctgaagactgagtgtggcagtcag
tttacaaacaaactcgaaggaatgtttaaggatattgaactctcaaaagagataaacgag
tccttcagacaatcatcccaggccaggacaaaactcccatcagggattgagatgagtgtt
catgtccttacaactgggtactggccaacgtatcctcccatggatgttagacttcctcat
gaattgaatgtataccaggatatcttcaaggagttttacctaagcaagtacagtggtagg
cgtttaatgtggcaaaattcattaggtcactgtgtcttgaaagcagattttcctaaaggc
aaaaaggagcttgcagtttctctgtttcagactgttgtcttgatgctgtttaatgacgct
gagaagctaagccttgaagacattaaggattcaactggcattgaggacaaggaactgaga
agaactctgcagtcccttgcatgtggaaaagttcgtgtcctacaaaagtttcccaaaggg
agagacgtggatgatggtgatacatttacgttcaatgacactttcattgctcctctgtac
cgcataaaggtgaatgcgatccaaatgaaggaaacagtggaggagaacacgagcaccact
gaaagagtattccaagaccgccaatatcaggttgatgctgctattgttcggataatgaaa
actaggaaggtgctgagtcacactcttctgataacagaactgttccaacagcttaaattt
ccgataaagccggcagatttgaagaaaaggattgaaagcctgattgaccgggagtaccta
gaacgggacaagaacaaccctcaaatttacaactacctagcataa

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