Malus sylvestris (European crab apple): 126615146
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Entry
126615146 CDS
T09027
Name
(RefSeq) general transcription factor IIH subunit 2
KO
K03142
transcription initiation factor TFIIH subunit 2
Organism
msyl
Malus sylvestris (European crab apple)
Pathway
msyl03022
Basal transcription factors
msyl03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
msyl00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
126615146
09124 Replication and repair
03420 Nucleotide excision repair
126615146
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
msyl03021
]
126615146
03400 DNA repair and recombination proteins [BR:
msyl03400
]
126615146
Transcription machinery [BR:
msyl03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
126615146
DNA repair and recombination proteins [BR:
msyl03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
126615146
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ssl1
C1_4
VWA_2
VWA
IBR
Tfb4
Motif
Other DBs
NCBI-GeneID:
126615146
NCBI-ProteinID:
XP_050138859
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Position
3:complement(10041587..10044782)
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AA seq
420 aa
AA seq
DB search
MNNGEQRRLNGEAEEDEDDDDANNGGLAAWERAYADERSWESLQEDESGLLQPIDNQSLK
HAQYRRRLRAASTARIQKGLIRYLFIVIDLSKAAAEMDFRPSRMGVVAKHVEAFIREFFY
QNPLSQVGLVTVKDGVAHCLTDLGGSPESHVKALMGKLECSGDSSLQNALDLVHGYLNQI
PSYGHREVLILYSALSTCDPGDIMETIQKCKKSKIRCSVIGLSAEIFICKHLCQETGGLY
YIALDEAHLKELILEHAPPPPAIAEFAIANLIKMGFPQRAGEGSVAICSCHKEAKVGAGY
TCPRCKARVCELPTECRICGLTLISSPHLARSYHHLFPIVPFDEVPLSLLIDQQNKFPRA
CFGCQQNLLGPGNKPGLRVACPKCKQHFCLECDIYIHESLHNCPGCESTRHSRIPNINEG
NT seq
1263 nt
NT seq
+upstream
nt +downstream
nt
atgaacaacggcgaacaaagacgcctaaacggagaagctgaggaagacgaagacgacgac
gacgcaaacaatggtggcctcgctgcctgggagcgagcttacgccgacgagaggtcgtgg
gagtctctgcaggaggacgagtccgggcttctccagcccattgacaaccagtccctcaaa
catgcccaataccgccgccgccttcgcgccgcctccacagcccgaatccaaaagggtctc
attcgttatcttttcattgttatcgacctctctaaggcagctgcagaaatggattttcga
ccaagccgaatgggggtcgttgcaaaacatgttgaggctttcataagagagtttttctac
cagaatccgctgagtcaagttggcctggtgactgtaaaagatggtgttgctcattgcttg
acggatcttggtggcagtcccgagtctcatgttaaagctttgatgggtaaactggaatgc
tctggtgactcgtccctacagaacgcattggatcttgtacatgggtatcttaatcagatt
ccatcatatggtcatagagaagtattgatcttatattcagctctcagtacctgtgatcct
ggagatataatggaaactatccagaagtgtaagaaatccaaaattaggtgctcagttatc
ggtctctcagcagaaattttcatatgcaaacatctatgccaagaaaccggtggcttgtac
tatattgcattggatgaggcacacttaaaagagttgatattggaacatgcacctccacct
ccagcaatagcagaatttgcaattgctaacttgataaagatgggcttcccacaaagagca
ggagagggctctgtggccatttgttcatgtcacaaggaggcaaaggtaggagctggatac
acttgtcctaggtgcaaggctcgtgtttgtgagctacctacagaatgtcgcatttgtggg
ctgacactcatttcttcccctcatttagcaaggtcttatcatcatctctttcccattgta
ccttttgacgaggtccctctgtcactactaattgatcaacaaaacaagtttcctagagct
tgtttcggctgccaacaaaatcttctcggtcctggaaacaagcccggccttcgggtcgct
tgcccaaaatgcaaacagcacttctgccttgaatgcgacatatatattcatgaaagcttg
cataactgcccaggttgtgagagcactaggcattccaggattccaaatataaatgaagga
tga
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