Malus sylvestris (European crab apple): 126617210
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Entry
126617210 CDS
T09027
Name
(RefSeq) probable polygalacturonase At3g15720
KO
K01184
polygalacturonase [EC:
3.2.1.15
]
Organism
msyl
Malus sylvestris (European crab apple)
Pathway
msyl00040
Pentose and glucuronate interconversions
msyl01100
Metabolic pathways
Module
msyl_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
msyl00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
126617210
Enzymes [BR:
msyl01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.15 endo-polygalacturonase
126617210
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Motif
Pfam:
Glyco_hydro_28
Pectate_lyase_3
Beta_helix
Motif
Other DBs
NCBI-GeneID:
126617210
NCBI-ProteinID:
XP_050141200
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Position
3:33652445..33654302
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AA seq
477 aa
AA seq
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MSIINTLIHILIFFFLPLPLFIGIAHSQKILDITKYGAVGDGQTDDSPAFVNAWKDLCQG
INEAINGIPTLNVPEGKTFLLQRLKFEGPCNRKNVHLQVLGNLLAPARGAWKECDSEDWL
SFSNVENLMLDGSGKIDGQGAAWWSTSQYDWRSRKLLGDNDCKPQKALQFQNCQNLKLSG
LTFLNSPQAHIGINSCDNADVSHLNIHAPEDSPNTDGIDISFSSHVTIRDSSIGTGDDCI
SIGDRCSFLSITNIACGPGHGISVGSLGEDGASSKVDNIYVKDCSFTGTTNGVRIKTWQG
GSGYARNITFERIKLDRAQYPIIIDQYYCNGEHDCKSQSSAVVVADVTYIDFEGTSATEG
AIKLDCDQVSGGCHNIVMDRINIMPAVRDMKIFATCNNAKGTYVGTTVPNVPCLQSSATE
PTRPTTIYTGSGGSGSANIHINYYLFCPLMTVLVATAGFLLTCVTHAFNLSNLHLVK
NT seq
1434 nt
NT seq
+upstream
nt +downstream
nt
atgtcaatcatcaacacactcattcacattttaattttcttcttcctccctttgccgttg
tttattggcattgcacatagccaaaaaatactggacataaccaagtacggtgctgtggga
gacgggcaaacggatgattccccagcttttgtgaatgcatggaaagatttatgtcaagga
attaatgaagctattaatggcataccaacacttaatgtgccggaggggaaaacattcttg
ttgcaacgtttaaaatttgaaggtccatgcaatagaaagaacgttcaccttcaagttcta
ggaaatttgttggcacctgcacgtggtgcatggaaagaatgcgattcggaggactggcta
agtttttcaaacgtcgaaaacctaatgctcgacggctcaggcaaaatcgacggccagggg
gctgcatggtggagcactagccaatacgactggagatcgcgcaagctcttgggggataac
gactgcaaaccacagaaggcactgcaattccagaactgccaaaacctcaagctcagcgga
ctcacttttctaaacagcccacaagcgcatattggtataaatagttgtgacaacgcagat
gtatcgcatttgaacatacatgcgcctgaagacagtccaaacactgacggtattgacatc
tccttctcgagccatgtcaccattcgtgattcgtctatcgggacaggcgacgattgtatt
tccattggcgaccggtgttcctttctctccatcaccaacattgcttgcggaccaggtcat
ggaattagtgttggaagcttgggagaagatggcgctagtagtaaagtggacaatatatat
gtgaaagattgtagtttcactggaactacaaatggagtgagaataaagacgtggcagggc
ggctccgggtatgcgagaaacatcacgttcgagaggatcaaacttgacagagctcaatat
cctatcattattgatcagtactattgtaatggggaacacgattgcaaaagtcagtcgtcg
gccgtggtggtggcggatgtgacgtacatcgattttgaaggcacttctgcgacggagggg
gcgattaaactcgattgcgatcaagtttcaggtggctgtcataatattgtgatggatagg
attaatataatgccagcggtgagggatatgaagatttttgcgacttgtaacaacgccaaa
gggacttatgtcggcactacggtgcccaacgtgccttgtctacagagttcagcgacggag
cctacaaggccaacaaccatctacaccggaagtggaggttctggcagtgctaatatacat
ataaactactacctgttttgtccactgatgacggttcttgttgcaacagctggtttttta
ttaacttgtgtaacacatgcttttaacttgagtaacttgcatctggtaaaataa
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