Malassezia sympodialis: MSY001_0212
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Entry
MSY001_0212 CDS
T06541
Name
(RefSeq) uncharacterized protein
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
msym
Malassezia sympodialis
Pathway
msym03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
msym00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MSY001_0212
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msym03019
]
MSY001_0212
03041 Spliceosome [BR:
msym03041
]
MSY001_0212
03009 Ribosome biogenesis [BR:
msym03009
]
MSY001_0212
03016 Transfer RNA biogenesis [BR:
msym03016
]
MSY001_0212
Enzymes [BR:
msym01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
MSY001_0212
Messenger RNA biogenesis [BR:
msym03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
MSY001_0212
Spliceosome [BR:
msym03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
MSY001_0212
Complex C
U4/U6.U5 tri-SnRNP related factors
MSY001_0212
Ribosome biogenesis [BR:
msym03009
]
Eukaryotic type
Pre-60S particles
Helicases
MSY001_0212
Transfer RNA biogenesis [BR:
msym03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
MSY001_0212
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
ResIII
nSTAND3
ATPase
Motif
Other DBs
NCBI-GeneID:
30055097
NCBI-ProteinID:
XP_018738855
UniProt:
M5E598
LinkDB
All DBs
Position
Unknown
AA seq
1032 aa
AA seq
DB search
MGQRRTGTKTAPRTAPEADAPARTPAPPRADKRARTAEPAPVVTDEFTAESTREVPVAPG
DTAPDAAASEAIVKLSHSVRHQVAIPPGYDYVPLSKHVPNDPPARSWPFELDPFQRTSVY
CIERGESVLVSAHTSAGKTIVAEYAIAQALRDGQRVVYTSPIKALSNQKYREFAAEFNDV
GLMTGDVTINPSASCLVMTTEILRSMLYRGSEIMREVAWVVFDEIHYMRDKERGVVWEET
IILLPRKVHYVFLSATIPNAMQFAEWISNIHAQPCHVVYTDFRPTPLQHYLFPQGGQGIH
LVVDEKGVFREDNFQKAMGALASASGEDPSSADAGRGRKGETKKGGTSGPSDIYKIVKMI
MVKRYNPVIVFAFSKRQCEALALQMSKLEFNTDEERDMVQTVFTNAIDALSPEDRALPQI
EHILPLLRRGIGIHHGGLLPILKEVIEILFQKGLLKVLFATETFSIGLNMPARTVVFTAV
QKWDGNEFRHLTSGEFIQMSGRAGRRGLDDRGIVIMMFDQKLDPAAAKTMVKGEADWLHS
AFHLGYNMVLNLMRVEGVSPESMLTSSFFQFQNAASVPALEQKLADTEAERDAIEVPDEE
AIGTYYTMKKTLQQLDEDRREVQRHPSYALPFLQAGRLVQVSAPERDFGWGVVVSYQKRA
VARGADAEMRAPSHAEYIVHVLLRCAPGTVVSKKQEFAPSFLGIEPGREGGEWIVVPVLL
THVQELSGIRLFLPKDLRLKEARAQVGKNMAEVHRRFPQGLPLLDPVKDMKIDDVKFQQL
LGKQEILRERIANAPIAQDRARCDELYALYAAKQAAQDQVAAIQAQITAAHNVLQLDELK
CRKRVLRRLGFTSADDIVEKKGRVACEISTGDELLLTELMFNGTFNDLTPEQCAALLSCF
VFGEKSEHPSRLREEMTAPLRVLQDTARRIAQVSVESQLPVVEQEYVQSFKVELIEAVLQ
WCQGARFADLCQLTDVFEGSIIRAFRRLQELLRQMAQAAKAIGNEELETKFEQALVKLER
PQSIIFSPSLYL
NT seq
3099 nt
NT seq
+upstream
nt +downstream
nt
atgggccagcgccgcacaggcacaaaaacggcgccgcgcacggcaccggaggcggacgcg
cccgcgcgtactccagcgccgccgcgcgcagacaagcgagcacgcacggctgagccagcg
cccgtcgtcacggatgagtttaccgccgagtcgacccgcgaggtgcctgtcgcccccggc
gacacggcgccagatgccgcggcgagcgaggctatcgtaaagctttcgcactcagtgcgg
caccaggtggcgatcccgccgggctacgactatgtgccgctgtccaagcatgtgccgaac
gacccaccagcgcggtcgtggccctttgagctcgatccgttccagcgcacgtccgtgtac
tgtatcgagcgtggcgaaagtgtgctcgtgagtgcacacacgtcagccggtaagacgatt
gtggccgagtacgcgattgcgcaggcgctgcgcgatggccagcgagtcgtgtacacgtcg
cccatcaaggccctgtctaaccaaaagtaccgtgagtttgccgccgagttcaacgatgtc
ggcctgatgacgggtgacgtgacgatcaatcccagtgcgtcgtgcctggtgatgacgacc
gagattctgcgctccatgctgtaccgcggctcggagattatgcgcgaagtcgcgtgggtc
gtctttgacgagatccactacatgcgcgacaaggagcgcggcgtcgtgtgggaagagacg
atcattcttctgccgcgcaaggtgcactatgtgttcctctcggccacgatcccgaatgcg
atgcagtttgccgagtggatttcgaatatccacgcgcagccgtgccacgtcgtgtacacc
gatttccgcccgacgccgctgcagcactacctgttcccccagggcgggcagggcatccac
ctcgttgtcgacgagaagggcgtgttccgcgaagacaacttccaaaaggccatgggtgcg
ctcgcaagcgcctcaggcgaggaccccagcagtgcggacgcgggccgcgggcgcaagggc
gagacgaagaagggcggcacgtccggcccgtcggacatttacaagatcgtcaagatgatc
atggtgaagcggtacaaccccgtgattgtgtttgcgttcagcaagcggcagtgcgaggcg
cttgcgctgcagatgagcaagctcgagttcaatacggacgaggagcgcgacatggtgcag
accgtgttcaccaatgccatcgacgcgctaagccctgaggaccgcgcgctgccgcagatt
gagcacatcctcccactgctgcgccgcggcatcggcatccaccatggcggactgctgccg
attctcaaggaggtcattgagattctgttccaaaagggcctgctcaaagtgctctttgcg
acagagacatttagtattggcctcaacatgcccgcgcgcaccgtcgtgttcaccgccgtg
caaaagtgggacggcaacgagttccgccacctgacgtcgggcgagtttatccagatgagt
gggcgcgctggacgccgtggtcttgacgatcgcggtatcgtgatcatgatgttcgaccag
aagctggacccggccgccgccaagaccatggtcaagggcgaggccgactggctccacagc
gccttccacctcggctacaatatggtgctcaacctcatgcgcgtggagggcgtgtcgccc
gagtcgatgctaacgagcagcttcttccaatttcagaacgcggcgtctgtgccggcgctg
gagcagaagctggccgataccgaggcggagcgcgacgcgattgaggtgccggacgaagag
gcgatcggcacctactataccatgaagaagacgctacagcagctcgacgaggaccgccgc
gaggtgcagcggcaccccagctatgccctcccgttcctgcaggcaggtcgcctcgtgcag
gtgtcggcgcccgagcgcgactttggctggggcgtcgtcgtctcgtaccagaagcgcgct
gtggcgcgcggcgccgatgctgagatgcgcgcgccgtcgcacgccgagtatattgtgcat
gtgctgctgcggtgcgcacccggcacggtcgtctctaagaagcaggagttcgcgccgtcg
ttcctgggcatcgaaccgggccgcgagggtggcgagtggatcgtcgtgccggtgctgctg
acgcatgtgcaagagctcagcgggatccgcttgttcctgccgaaggatctgcgcctcaag
gaggcgcgcgcgcaggtcgggaagaacatggccgaggtgcaccgccgcttcccgcagggc
ctcccactgctcgacccggtgaaggacatgaagatcgacgacgtcaagttccagcagctg
ctcggcaagcaagagatcctgcgcgagcgcattgcgaatgcgccgatcgcgcaggaccgc
gcgcgttgtgacgagctgtatgcgctctacgccgcgaagcaggccgcgcaggaccaggtg
gcagccatccaggcgcaaatcaccgcggcgcacaatgtgctgcagctcgacgagctcaag
tgccgcaagcgtgtgctgcgccgcctcggctttacgtccgcggacgacattgtcgagaag
aaggggcgtgtcgcgtgcgagatcagcacgggcgacgagcttttgctcacggagctcatg
ttcaacggcacctttaacgatcttacgcccgagcagtgtgccgcgctgctctcgtgcttt
gtctttggcgagaagagtgaacacccgtcgcgcttgcgcgaggaaatgacggcgccccta
cgtgtgctgcaggacacggcgcgccgtatcgcgcaggtatcggtggagagccagctgccg
gtggtggagcaggagtatgtgcagagcttcaaagtggagctgatcgaggcggtgctgcag
tggtgccaaggtgcgcgctttgcggatctttgccagctgacagacgtgtttgagggctcg
atcattcgtgcattccgtcggctgcaagagctgctacgccagatggcccaggccgccaaa
gcgatcggcaacgaggaactcgagaccaagtttgagcaggcgctcgtcaagctcgagcgg
ccccagtcgattatctttagcccgtcgctgtatctgtag
DBGET
integrated database retrieval system
