Malassezia sympodialis: MSY001_1146 Help Entry MSY001_1146       CDS       T06541                                  Name (RefSeq) uncharacterized protein   KO K14326   regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3] Organism msym  Malassezia sympodialis Pathway msym03013   Nucleocytoplasmic transport msym03015   mRNA surveillance pathway Brite KEGG Orthology (KO) [BR:msym00001]  09120 Genetic Information Processing   09122 Translation    03013 Nucleocytoplasmic transport     MSY001_1146    03015 mRNA surveillance pathway     MSY001_1146  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03019 Messenger RNA biogenesis [BR:msym03019]     MSY001_1146 Enzymes [BR:msym01000]  5. Isomerases   5.6  Isomerases altering macromolecular conformation    5.6.2  Enzymes altering nucleic acid conformation     5.6.2.3  DNA 5'-3' helicase      MSY001_1146     5.6.2.5  RNA 5'-3' helicase      MSY001_1146 Messenger RNA biogenesis [BR:msym03019]  Eukaryotic type   mRNA surveillance and transport factors    Surveillance factors     Surveillance complex      MSY001_1146    mRNA cycle factors     Common to processing body (P body) and stress granule      MSY001_1146 BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  UPF1_Zn_bind AAA_12 AAA_11 UPF1_1B_dom AAA_30 AAA_19 ResIII DEAD UvrD-helicase Helicase_RecD SLFN-g3_helicase AAA_22 ATPase nSTAND3 AAA_5 SRP54 AAA_16 PhoH SNF2-rel_dom AAA_10 AAA_25 Mg_chelatase zf-UBP Motif Other DBs NCBI-GeneID:  30056031 NCBI-ProteinID:  XP_018739747 UniProt:  M5E6X4 LinkDB All DBs Position Unknown AA seq 958 aa AA seqDB search MGDSADERVEHLADAISKAKVTDIPTDFDALSDDLDSEEPETKALPEHACAYCGIDDVNC VLQCLTCKRWFCNGRGQTPSSHIVTHLVRARHKAVMLHPESPLGDTVPECFTCGSKNPFM LGFLPAQDSAVIMLLCRNPCNYAANTKEVEWDASRWAPLIENRSFLSWFVRIPSSATQRN AQPISSAQICKLENLWRDNEQATLEDVENPTKEKELPKTLVRYENAEQYCNIFRALLSVE EQYDKKLKESLVQHDVAVRWEPGKGRSMSLWLRLPQLESGEMRLGIGDELCVSYTGSLAS KWKAVLKVSQFSPISSMEVACDVPQYLQPPTDCTTNYTVEFVWVGVTYARMKKALSVFLN LRDCMAPFLRKKLLGFPTGSEQVQFQEPKRYTAPGLPDLNHSQVAAIKSVLSKPLSLIQG PPGTGKTVTSATLVYHLTQMTKGKVLVCAPSNVAVDQLTEKINRTGLKVVRVVSRTRETM LSHVRFLSLHEQVALMPPSPEMTRLKNLQKKNGELTADDERRYRNLVFQMERKVLAAADV ICTTCSSSADRRLENFDFSAVLIDEATQAVEPEILLPIVRGCKKLVLVGDHQQLGPVVMS NKVADAGMNLSLFERLILLGNQPRRLEVQYRMHPCLSEFPSNMFYDGMLQNGVTAQERLR RQDPIPWPIPNMPMMFYQNLGQEEISGSGTSFLNRTEASSVEKIITLFLKSGVVPEQIGV VTPYEGQRNFIINYMQMFGSLNKELYRSVEVASVDAFQGREKDYIIVSCVRSNDRGGIGF LSDPRRLNVALTRARYGLIVIGNSKVLCKNPLWYHLLVHFKDRFALVEGALSNLQPSMIQ FGRPPVEKHKVTPMQRMALQKTETMDSLAMDPIHAPFRSLGATAASLREDMWSSLSLDAK SLSYTQSDRLTKKMTGGEDDLDSLDGFKSQASLEDELEDNSADALFPMWGRKSVTPFT NT seq 2877 nt NT seq  +upstreamnt  +downstreamnt atgggggactctgctgatgagcgagtagagcacctagcagatgccatatccaaggcaaaa gttacagatattcccaccgactttgatgcactgtccgacgaccttgattcggaggagccg gagaccaaggcccttcctgagcacgcttgtgcctactgtggcatcgacgatgtaaattgt gttcttcaatgtctcacctgtaaaagatggttttgcaacggtcgcgggcaaacaccatcc tcccatatcgtcacccatttggtgcgcgcgcggcacaaggctgtcatgttgcatccagag tcgcctctcggtgacacagtgcccgagtgctttacgtgcggctcgaaaaacccttttatg cttggttttctacccgcccaggacagcgccgtcatcatgctcttgtgtcggaatccttgc aactacgctgccaacacgaaggaagtagaatgggatgcttctcggtgggcacctttgatt gaaaaccgatctttcctttcctggtttgttcgaattccaagttcggccacgcaacgaaat gcgcagcccatttcctctgcgcagatttgcaaactagaaaatctgtggcgcgacaacgag caagctacgttggaagatgtggaaaaccccaccaaagagaaagaacttcctaagaccctt gtgcgctacgagaatgcggaacagtattgtaatattttccgcgcactactctctgtggaa gagcagtacgataaaaagctgaaagaaagtctcgttcagcatgatgtggcggtgcgctgg gagccaggtaaaggtcgttcgatgtccctgtggcttcgcttgccacaacttgagagcggt gaaatgcgcctcggtattggtgacgagctttgcgtctcttacacggggtcgttggcctct aaatggaaggcagtcctaaaggtatcgcaattctcgccaatctcatccatggaagtggct tgtgatgtaccacagtacctccagccaccgacggattgcaccaccaactatactgtggaa tttgtttgggtcggcgtaacgtatgctcgcatgaagaaggcattgtccgtgttcttgaac cttcgcgattgtatggctccctttttacgcaaaaaactcttgggcttccccaccggctcg gagcaggtccagtttcaagagccaaaacgctacactgccccagggctgcctgatctgaac cacagccaggtcgctgcgattaaatccgttttatcaaagcctttgagcttaattcaggga cctcctgggacaggtaagacagtgaccagtgccacacttgtgtatcatctgacacaaatg accaaaggaaaagtgcttgtctgtgcaccttcgaatgtggcggtagatcagcttaccgaa aaaatcaatcgcactggtctgaaagtcgtgcgcgttgtttctcgaactcgcgaaaccatg ttgtcacatgtgcgctttctgtcactgcatgagcaggttgcgctaatgcctcctagccct gaaatgactcgactcaaaaatctccagaagaaaaatggcgagttaactgctgatgacgaa cgccggtaccggaacctggttttccagatggaacggaaagtgttggctgcagcggatgtt atttgcacaacctgttcgagcagcgcggatcgtcgacttgaaaactttgacttctctgct gtgctgattgatgaggcaacacaggctgtggagcccgaaatcttgcttcccattgtgcgc ggttgcaagaaacttgtgcttgttggcgaccaccagcaactaggccccgtcgttatgagt aacaaagtggcagacgctggtatgaatttgagtttattcgagagattaattcttcttggc aatcagcctcgacgtctagaagtgcagtaccgtatgcacccatgcttgtctgaatttccc agcaatatgttctacgatgggatgctccaaaatggtgttacggcccaggaacgtctccgg cgtcaagaccccattccatggcctattcctaacatgcctatgatgttttaccaaaatttg ggccaggaagaaatttcaggcagtggaacgtctttcttgaaccgaacggaggcaagcagt gttgaaaaaattatcacgctgtttttaaaatctggtgttgtccctgagcaaattggtgtg gttacgccttatgaagggcagcgaaactttatcatcaattacatgcaaatgtttggcagt cttaacaaggagctttaccggagtgtggaggtcgccagtgtggatgcgttccaaggccgt gaaaaagattatatcattgtcagttgtgtgcggagcaacgacaggggcggaatcggattc ctcagcgatcctcgacgtctcaatgttgctctcactcgtgcacgttatggtcttattgtt atcggaaattccaaggtcctgtgcaaaaatcccctctggtaccatctgttggttcatttc aaagatcgctttgcattggtggaaggcgctctctctaaccttcaaccatcgatgatccag tttggtcgccctcctgttgaaaaacacaaagttacacccatgcagcgcatggctctacaa aaaactgagacgatggattcactggctatggacccgatccacgcaccgttccgctcactc ggtgctacagctgcttcactgcgggaggatatgtggagcagtttgtcactagatgccaag tctttatcgtatactcaaagtgacagactcacaaaaaagatgacaggcggggaggacgat cttgacagccttgacgggttcaagagccaggcatcgctggaagatgagctggaagacaac tccgcggatgcactcttccccatgtggggacggaaatctgtcactccatttacataa

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