KEGG   Malassezia sympodialis: MSY001_2419
Entry
MSY001_2419       CDS       T06541                                 
Name
(RefSeq) uncharacterized protein
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
msym  Malassezia sympodialis
Pathway
msym03030  DNA replication
msym03410  Base excision repair
msym03420  Nucleotide excision repair
msym03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:msym00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    MSY001_2419
   03410 Base excision repair
    MSY001_2419
   03420 Nucleotide excision repair
    MSY001_2419
   03430 Mismatch repair
    MSY001_2419
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:msym03032]
    MSY001_2419
   03400 DNA repair and recombination proteins [BR:msym03400]
    MSY001_2419
Enzymes [BR:msym01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     MSY001_2419
    6.5.1.6  DNA ligase (ATP or NAD+)
     MSY001_2419
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     MSY001_2419
DNA replication proteins [BR:msym03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    MSY001_2419
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     MSY001_2419
DNA repair and recombination proteins [BR:msym03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     MSY001_2419
   NER (nucleotide excision repair)
    Other NER factors
     MSY001_2419
   MMR (mismatch excision repair)
    Other MMR factors
     MSY001_2419
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N eIF-3c_N
Other DBs
NCBI-GeneID: 30057304
NCBI-ProteinID: XP_018740946
LinkDB
Position
Unknown
AA seq 675 aa
MARKQATLESLFAGEPPSKRARAEPVPSEPAEVAGSEKEAAQAAIVVAETLAAKPVPKAK
AAIPYSMLVDVFAQVEATTKRLEILQLVTNLFVRVILQSRDNDEPLVVASENLLYTVYLC
INRLCPDYEGLELGIGEGLLIKAIAQSTGREITRIKKDLEAKGDLGLVAMASKKHQPTMF
RVQGLTVPSVFKQLKEIAAASGAKSQDKKLGIIKRLLAACTGDESKYLIRSLEGKLRIGL
AEKTVLMAMAQAVMLAEMGPAAQHKDEEALAAQLEEGVHTVKAIFSELPSYDLLVPALLE
HGVAGARATLQLTPGIPLKPMLAKPTKAIGEVLDRFEGQAFTCEFKYDGERAQVHGFLGS
DGQRKVYVFSRNSEDMSVKYPDLMAQIPHCLTDEVQSFVLDAEAVAWKKADAAAGETEGR
LLPFQELSRRKRKDVRAEDVQVAVKLFGFDLLYLNGQPLLHETLERRRELLQAHFRPVRD
EFDYATHRDCITTEEIQTFLDESIACGCEGLMVKMLQGGDATYEPSRRSINWLKLKKDYL
SGTGDSLDLAVIGGYYGKGKRTNVYGAFLLACWFTEADLASHHATLQALEIHQKKGYYDV
GEAKPDVRKATNNRCAWHFPAVPTFPTYVAPTDAGIRDDKTPEASTTPEQVANMYRAQAV
ASQGARGIDDDDGFW
NT seq 2028 nt   +upstreamnt  +downstreamnt
atggcgaggaagcaggcgactcttgagagcctgttcgcgggcgagccgcctagcaagcga
gcgcgcgccgagccagtgccttcagagccggccgaagtggcgggctctgagaaggaggcc
gcgcaggccgcgatcgtggtggcggagacactcgccgcgaagcccgtgcccaaggctaag
gcagccataccctactcgatgctggtggatgtgtttgcacaggtcgaggcgacgacgaag
cgactcgagatcttgcagctggtaaccaacttgtttgtgcgggtgatcttgcagagccgc
gacaacgacgagccgctcgtcgtggcgagcgagaatctgctgtataccgtgtacctgtgc
atcaaccggctgtgtcccgactatgagggccttgagctgggcatcggcgagggcttgctg
atcaaggccattgcacagagcacagggcgcgagataacgcgcatcaaaaaggacctcgag
gccaagggcgacctggggctcgtggcgatggcgtccaagaaacaccagcccaccatgttc
cgcgtgcagggcctcactgtgccatccgtattcaagcagctgaaagaaattgcggcggcg
tccggcgccaaatcgcaggacaagaagctcgggattatcaagcgattgctggcggcgtgt
acaggtgatgagagcaagtacctgatccgcagcttggaaggcaagctgcgtatcggcctt
gcagaaaagacagtgctgatggccatggcccaggcggtgatgctggccgagatgggcccc
gcagcccagcacaaagacgaagaggcattggcagcgcagctcgaagagggcgtgcacacc
gtcaaggcgatctttagcgagctgccgtcgtacgacttgcttgtgcccgcactgctagag
catggcgtcgcaggtgcgcgcgcgacgctccagctgacgccgggcatcccgctcaagccc
atgctggccaagcctacgaaggcgattggggaggtgctggaccgtttcgaggggcaggcc
tttacgtgcgagttcaagtatgatggcgagcgtgcgcaggtccatggttttctgggctct
gacgggcagcgcaaggtatatgtgttcagccgcaactcggaggacatgagtgtgaaatac
cccgacctcatggcgcagattccccactgcctcacggacgaggtgcagagctttgtattg
gatgcagaggctgtggcgtggaagaaagcggatgcggcagcaggtgaaacggaagggcgc
ctattgccgttccaggagctcagccggcgcaagcgcaaggatgtcagggcggaagatgtg
caggttgccgtcaagctgttcggttttgatctgctgtacctgaatgggcagccactgctg
cacgagacgcttgagcgtcggcgcgaactgctacaggcccacttccggcccgtgcgtgac
gagtttgactatgcgacacaccgtgactgcattacgaccgaggagatccagacattttta
gacgaaagcattgcgtgcgggtgtgagggcctcatggtcaagatgctgcagggcggcgat
gcgacgtacgagccaagccggcgctcgatcaactggctgaagctgaagaaagattacttg
tccggcacgggcgacagcctggacctggcggtgattggcggttactacggcaaaggcaag
cgcaccaacgtatatggcgcctttctgctggcttgctggttcaccgaggcggacctggcg
tcacaccatgcgacgctccaggcgctcgagatccaccagaagaaggggtactatgacgtg
ggtgaggccaagccggatgtacgtaaagccactaacaatagatgcgcgtggcatttccct
gcggttcccacgtttcctacgtacgtggcccctactgacgcaggcatccgcgacgacaag
acacctgaagcgtctacgacgcctgagcaggtcgccaacatgtaccgcgcacaggcggta
gcgagccaaggcgcgcgtggcatcgacgacgacgacgggttctggtag

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