Methylocaldum szegediense: MSZNOR_5020
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Entry
MSZNOR_5020 CDS
T09668
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
msze
Methylocaldum szegediense
Pathway
msze03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
msze00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
MSZNOR_5020 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
msze03400
]
MSZNOR_5020 (mfd)
Enzymes [BR:
msze01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
MSZNOR_5020 (mfd)
DNA repair and recombination proteins [BR:
msze03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
MSZNOR_5020 (mfd)
BRITE hierarchy
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
MFD_D3
CarD_TRCF_RID
ResIII
SNF2-rel_dom
Glyco_tran_WecG
UB2H
ERCC3_RAD25_C
SecA_DEAD
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
CAI8976775
LinkDB
All DBs
Position
MSZNORmain:complement(4832490..4835972)
Genome browser
AA seq
1160 aa
AA seq
DB search
MNQAAKHLGTLSPFTPAVPIHNATTMVWQSLNGCGDSLALAEAARQNKRLYLIVTEDTHT
ALRLEHEIEFFLGGNVPVLHFPDWETLPYDVFSPLPEIVSERLKTLAQLSRIDHGILITP
VATLMQRLAPRSHVLAKTFILKVGGQLNLEETRQRLESVGYECVSQVLQHGEFAVRGSII
DLFPMGSTVPYRIELFDDEVESIRTFDPETQRSVDKVREISLFPAREFPFDEEAIKRFRR
SFRTHFSEASINNPLYQEVSKGIAPGGIEYYLPLFVEETETLFHYLPKTATVVLHHAVDA
AAEAFFREAEKRYDQRSGHVDRPPLPPESLYLTPAALAEKFALYPRIRIPLSSEQPAESF
ESVDYNCRPLPPLAVDPKLKEPAAALSSFIREEADRILFVAETAGHREALLDSLAKYGIK
PQVVENWAAFLVAEKTPCLVVAPMDHGLWLADPSLAIITETQLSGEKVQQRRRRKSAAER
NLEQILRNLEELDIGAPVVHQDHGVGRYLGLTKLTVGGIETEFLALEYANNDKLYVPVSS
LHLISRYSGASPESAPLHKLGGEQWQKAKRKALERVRDIAAELLNIYAKRAAKEGYAYKT
VTEEYAAFAAGFPFEETPDQEAAINDVIRDMASPRPMDRVICGDVGFGKTEVAMRAAFIA
ALNGKQVAVLVPTTLLAQQHYRNFRDRFADWPIRVEVVSRFVGKKQQEQLLEDLAQGKID
ILIGTHKILQKDVRFKNLGLVIVDEEHRFGVAQKEHFKKLRSELDFLTLTATPIPRTLNM
AMSGLRDISIIATPPPNRHAIKTFISEWDDALIQEAILREIKRGGQVYFLHNKIETMEKT
ARDLEKLVPTARIRIAHGQMPERELERIMLDFYHQRFNVLVCTTIIESGIDIPTANTIII
HRADLLGLAQLHQIRGRVGRSHHRAYAYLLVPPKSLMTADAVKRLEAIEATGELGSGFML
SSHDLEIRGAGELLGEEQSGQIQEIGLSLYTELLERAVAALKSGKSLDLDMLPHEAGPEI
DLQCPALIPDTYLPDVHTRLVLYKRIANAKNEEDLRQLQVEMIDRFGLLPPPTKNLFAIT
ELKLRAEALGVHKIEAGSGGGRLIFHPNPPIDPAQVIRLIQTQPQTYKLDGPDKLKFFAR
FDTPESKVVFVDQLLEQLAA
NT seq
3483 nt
NT seq
+upstream
nt +downstream
nt
atgaatcaagctgcaaaacatttgggaactctttcgccgttcacgccagcagtaccgatt
cataatgcaacgaccatggtctggcaaagcttgaacggctgcggcgattccctggccttg
gctgaagcggcaagacagaataagcggctgtatctgatcgtgacggaagatactcatacc
gctcttagactcgaacatgaaatcgagtttttccttggcggaaatgtacccgtactccac
tttcccgactgggaaaccttaccttacgacgtgttttcgcctcttcctgaaatcgtctcg
gagcgactgaaaacgctcgcccaactctcgcgcatcgaccacggcatactgatcacgccg
gtcgctacgctgatgcaacggttggcaccacgttcccacgtattggccaagacctttata
ttaaaagtaggcggccaacttaatctggaagagactcggcaacgactggagagcgtcggc
tatgagtgcgtgtcgcaagttctacagcacggcgaatttgcagtacgcggatcgatcatt
gatcttttccctatggggagcaccgttccctatcgtatcgagctttttgatgacgaggtg
gaatcgatccgaactttcgaccctgaaactcaacggtcggtcgacaaggtcagagaaatt
agtttgtttccagctcgcgagtttccattcgacgaagaagcaatcaaacggttccgacgg
agttttagaacgcatttctcggaagcatccatcaacaatccgttgtaccaggaagttagc
aaaggtatcgcacccggcggcatcgaatattatttgccgctgttcgtcgaagaaaccgaa
accctgtttcactatctaccgaaaacagcgacagtcgtgctccaccacgctgttgacgcc
gctgccgaggcgttttttcgggaggccgaaaaacggtacgaccagcgctcggggcatgtc
gaccgccccccgcttccaccggaatcgctgtatctgacacccgccgctctggcagagaaa
ttcgccctctatcccagaattcgaattccactgtcgtccgagcagcccgcggaaagtttc
gagtcggtcgactacaattgccgcccgcttccgcctctcgcggtcgatccgaagctgaaa
gagcccgccgcggcgctttcgtcgttcatccgtgaagaggcggataggattttgttcgtt
gcggaaacggcagggcatcgcgaagcgctactggatagcctggccaaatacggcataaag
ccgcaggtcgtcgaaaactgggccgctttcctcgtcgccgagaaaacgccatgcttggtc
gttgcccccatggatcacggcttatggctggccgatccctcgttggccatcattaccgaa
acccagctttccggagaaaaggtccaacagcgcagacggcgcaagtcggccgccgaacgc
aatctcgaacagatcctccgcaacctcgaagaactggacatcggtgcgccggtagtgcat
caggaccatggcgtcggccgctatcttggcctgaccaaactcacggtgggcggtatcgag
accgagtttctcgcgctcgaatatgccaacaacgataagctgtacgtcccggtgtcctcg
ctgcatttgatcagccggtacagcggcgccagcccggaatctgcgcctctgcacaagctg
ggcggagaacagtggcaaaaggccaagcgcaaggcgctggagcgggtacgggatattgcc
gccgaactgctgaacatttacgccaagcgagcggccaaggaaggatacgcctataaaacc
gtcaccgaagaatacgccgctttcgccgccggttttcccttcgaagaaacacccgaccag
gaagctgccatcaacgacgtcatcagggatatggcgtcccctcgccccatggacagagtg
atctgcggcgacgtcggtttcggcaagaccgaagtcgcgatgcgggccgctttcatcgcg
gcactgaacggcaaacaggtcgcggttctggtgcccacgacactattggctcagcagcat
tatcggaacttccgggaccgattcgccgattggccgatccgggtcgaagtggtttcacgc
ttcgtcggcaagaagcagcaggagcaacttctcgaggatttggctcagggtaagatcgac
atcctcatcggtacccataagattttgcaaaaggatgttcgcttcaagaatctgggactg
gtgatcgtcgacgaggaacaccggttcggcgtcgcgcaaaaagaacatttcaagaaactg
cgcagcgaactggactttctcaccctaacagccacaccgattccgcgcacgctcaatatg
gccatgtccgggctacgggacatttccatcatcgccaccccgcctcccaatcgccacgcc
atcaaaaccttcatcagcgaatgggacgatgccttgatccaagaagcgatactccgggaa
atcaagcgcggcgggcaggtttatttcctgcacaacaagatcgaaaccatggagaaaacg
gcacgcgacttggaaaaactggtacctactgcacgcattcgtattgcccacggccagatg
ccggagcgggaattggaacgtatcatgctggatttttaccatcagcgtttcaacgtcctg
gtttgcaccaccatcatcgaaagcggtatcgatattccgaccgcgaacaccatcatcatc
caccgcgccgatttgctggggctcgcccagttgcaccagatcaggggaagggtcggccgc
tcgcatcatcgcgcttacgcttatctgctggtaccgccgaagtctctgatgaccgccgac
gccgtcaagcgtctcgaggccatcgaagccacgggtgaactcggctcgggattcatgctg
tcatctcacgacctcgaaatccgcggtgccggagaattgttgggcgaggagcagagcggt
cagattcaggagatcggactaagcctatataccgaactgctggagcgggccgtggcagcg
ctcaagtcgggcaaatctctggatctcgatatgctcccccacgaagcaggtcccgagatc
gacctccaatgccctgccctcattcccgacacctacctgcctgacgttcacacccgtctc
gtgctctacaaaaggatcgccaatgccaagaacgaagaggatctacgccagctgcaagtg
gagatgatcgaccgcttcgggcttctgcccccgccgaccaaaaacttgtttgcaatcacc
gaactcaaactgcgagccgaggcccttggcgttcacaagatcgaggcaggctcgggaggc
ggacgtctgatattccacccgaacccgcccattgatccggcccaagtcatccgtttgatc
caaacccaaccgcagacttataagctggacggtccggataagctgaaattttttgcccgt
ttcgacacgcccgaaagcaaggtcgttttcgtcgatcaattactggagcaattggcggcc
tag
DBGET
integrated database retrieval system
