Methylobacterium tardum: M6G65_14690
Help
Entry
M6G65_14690 CDS
T08338
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
mtad
Methylobacterium tardum
Pathway
mtad03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
mtad00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
M6G65_14690 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mtad03400
]
M6G65_14690 (ligD)
Enzymes [BR:
mtad01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
M6G65_14690 (ligD)
DNA repair and recombination proteins [BR:
mtad03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
M6G65_14690 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
RNA_ligase
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
URD39536
LinkDB
All DBs
Position
complement(3068548..3071076)
Genome browser
AA seq
842 aa
AA seq
DB search
MVKLLEPYRAKRDFGVSSEPPGRRGRKAKKARFVVQKHDATRLHYDLRLEIDGVLKSWAV
TRGPSLVPGDKRLAVQTEDHPIDYLRWEGAIPKGQYGGGTMIVWDTGHWDPVGDLAAGLA
KGHVEFALHGDRLKGRWHLVRMKGRGSERKEPWLLLKAEDEHARLKGDADILEEHDTSVL
SGRTNRDLAKGGAIRADHEARARVEAGRTTRPTASRSARGRKAILPPFVEPALATLVETV
PSGRDWLFEIKHDGYRMQARIDGGSVTLLTRSGLDWTAKFKPIAAALKALKLPSALIDGE
IVVETESGVSSFSALQQALTSGEIGGAVFYAFDLLYLDGKDLRALPLIERKDLLLQSLGD
VDPKSRIRFSEHLVEDGAAMARHACRLGLEGIIAKRTDAAYRSGRSDLWRKVKCSHSEEF
VIAGYMPSTSAVRSVGSLILGSYEGEHLVHVGRVGTGFSNTAARDLWTQLDPLRIKASPF
SMELPPLARRNAKWVDPRLVCEVTFRGWTADNQLRHASFKMLRSDVRPDEMVREAAMKRP
KPRALNSQVKNTPAESVTLTHPDRVLWDDVGLTKEGLAAYYTEIAEHILPHLVDRPLSLV
RCPDGVGSCFYQKHGWAGMDDRYLHLVGEGSERAVVIRDRAGLRALVQASVLEIHPWGAT
AADPDRPDRLVFDLDPGEGVGWGDLVAGALDVRERLGRLGFAAFVKTTGGKGVHVVTPLM
PQATWTEAKAFTKRVAAEMAKDTPERYVATVSKQAREGRIFVDYLRNQRGATAVSAFSTR
ARAGAPVSVPVSWDELPSLGSGARFSVASVPGRLAASKQDPWANFTHAARALGVSGHHAQ
RT
NT seq
2529 nt
NT seq
+upstream
nt +downstream
nt
atggtcaagctcctcgaaccctatcgcgccaagcgggattttggagtctcatccgagccg
ccgggtcggcgtggccggaaggccaagaaggcccgtttcgtggtgcagaagcacgatgcc
acgcgcctgcactacgacctgcggctcgagatcgatggcgtgctcaagagctgggcggtg
acacgcgggccgagcttggtacccggcgataagcgcttggcagtccagacagaggaccac
cccatcgactacttgcgctgggagggcgcgatcccgaagggccagtacggcggcggcacc
atgatcgtctgggacaccggacactgggatccggtcggggatctcgcagccgggctggcg
aagggccacgtcgagttcgccctccacggcgaccggctcaagggccggtggcacctcgtg
cggatgaagggccgcggcagcgagagaaaggagccctggctcctactgaaggccgaggac
gagcatgcgcgcctgaagggcgacgccgacatcctagaggaacacgacacctcggttctg
tcaggccgcaccaaccgggaccttgcgaaaggtggagccatcagggccgatcacgaggct
cgcgctcgggtcgaggccggtcgcaccacgaggccgacggcaagccggtccgcgcgcggt
cgcaaggccatccttccgcccttcgttgagccggcgctcgcgaccctggtcgagacggta
ccgagcggccgtgactggctgttcgagatcaagcacgacggctaccgcatgcaggcgcgg
atcgacggcggatccgtgacgctgctgacgcgctcgggcctcgactggacggccaagttc
aagccgatcgcggcggctctcaaggccctgaagctgccctcagccctgatcgatggtgag
atcgttgtcgagacggagagcggcgtgtcgagcttttcggctctgcagcaggcgctcacc
tcgggcgagatcggaggggcagtcttctacgcgttcgatcttctctacctggatgggaag
gacctccgcgctctgccgctcatcgagcgcaaggatctgctgttgcagagcctcggcgac
gtggatccgaaaagccgcatccggttcagcgagcatctcgtcgaggacggcgcggccatg
gcacgccacgcctgtaggctcgggctggagggcatcatcgccaagcgcacggacgcggcc
taccgttcagggcgcagtgacctctggcgcaaggtgaagtgctcgcattccgaggagttc
gtcatcgccggctacatgccctcgacatcggcggttcggtctgtcggttcgctgatcctc
gggtcgtacgagggcgagcacctcgtgcacgtgggacgggtcgggaccgggttcagcaat
accgccgcgcgcgatctctggacgcaactcgacccgttgcggatcaaggcctcgccgttc
agcatggagttgccaccgctagcgcgccgcaacgccaaatgggtcgatccgcggctcgtc
tgcgaagtgacattccgtggctggacagccgacaaccagctgcggcacgcttccttcaag
atgctccgttcggacgtgcgaccggacgagatggtccgggaggcagcgatgaagcgcccg
aagccgcgtgccctgaactcccaggtgaagaacacaccggccgagagtgtgaccctgaca
catcccgatcgcgtactgtgggacgatgtcggtctcacgaaggaaggtctagccgcgtac
tacaccgagatcgccgagcacatcctgccgcacttggtcgaccgaccgctgtcgctcgtt
cgatgccctgacggcgtcggctcatgcttctaccagaagcacggctgggccgggatggat
gatcggtatctccatctggtcggggagggctccgaacgggccgtggtgatccgcgaccgc
gccggtctccgcgctctggtgcaggcgagcgttctcgagatccatccttggggtgcgaca
gctgccgatccggaccggccagaccgcctggtcttcgacttggaccccggtgagggtgtc
ggatggggcgatcttgtggccggcgcgctcgacgtccgcgagcggctcgggcgtctgggg
tttgcggccttcgtcaaaaccacgggtggcaagggggtgcacgtcgtcactccactcatg
ccgcaggcgacatggaccgaggcgaaggccttcacgaagcgcgtcgcagccgaaatggca
aaggacacacccgagcgctacgtggcgaccgtctcgaagcaggcccgagaaggccgcatc
ttcgtggattacctgcgcaatcaacggggcgcgaccgccgtttcggccttctcgacccgt
gctcgcgcgggcgcgcctgtgtctgtgcccgtgagctgggacgagcttccgtcgctcggc
tccggcgcacgcttcagcgtcgcgagcgtgccgggccgcctcgccgcgtcgaagcaggat
ccctgggctaactttacgcatgcagcgcgtgcactcggtgtgtctggccaccacgcgcaa
aggacgtag
DBGET
integrated database retrieval system
