Methylobacterium tardum: M6G65_22935
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Entry
M6G65_22935 CDS
T08338
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
mtad
Methylobacterium tardum
Pathway
mtad03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mtad00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
M6G65_22935
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mtad03019
]
M6G65_22935
Enzymes [BR:
mtad01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
M6G65_22935
Messenger RNA biogenesis [BR:
mtad03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
M6G65_22935
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_30
AAA_22
CMS1
MINT_RAM7
Motif
Other DBs
NCBI-ProteinID:
URD35353
LinkDB
All DBs
Position
4788124..4789662
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AA seq
512 aa
AA seq
DB search
MTQFTDFGLAQPVLRALSEAGYVAPTPIQAQAIPPAMTGRDLCGIAQTGTGKTAAFALPI
LHRLSLSDRRAPRRGCRVLVLSPTRELANQIAESFSDYGRHLSYTTTVVFGGVTISRQER
ALAPGVDILVATPGRLIDLIERRSLTLDGVEILVLDEADQMLDLGFIHALKRIVKMLPTQ
RQSLFFSATMPKNIAGLASQYLTDPVQVAVTPVATTAERVEQQVIFVHTGAKQALLGHIL
RDPAIERVLVFTRTKHGADRVVRGLDKVGIAAAAIHGNKSQPQRERALAAFKDGTCRVLV
ATDIAARGIDVEGVSHVVNFDLPNIPESYVHRIGRTARAGADGLAISFCNDEEKAYLRDI
ERVTRQKVPVAGFPEGFNPPSRQEAAEIAREEERRPERQQQRPGGGRQGQRPRQQQGRPQ
QGRPEGGRGFGGQGAPRQGRPQEGRADGRGHAPQHAPQGRETRADRPARPQGERPNQGRP
NRDARPQRADARPRSGGNEGRSIGWLERAPRS
NT seq
1539 nt
NT seq
+upstream
nt +downstream
nt
ttgacccaattcaccgatttcggcctcgcccagcccgtgctgcgggcgctcagcgaggcc
ggctacgtcgcaccgacgccgatccaggcccaggcgatcccgccggccatgacgggccgc
gacctctgcggcatcgcccagaccggcaccggcaagactgcagccttcgcgctgccgatc
ctgcaccgcctgtcgctctcggaccgccgcgccccgcgccgcggctgccgggtgctggtg
ctctcgccgacgcgcgagctcgccaaccagatcgccgaatccttctcggattacggccgt
cacctatcctacaccaccacggtggtgttcggcggcgtcaccatcagccgccaggagcgg
gcgctcgcaccgggcgtcgacatcctggtcgccacgccgggccgcctgatcgacctgatc
gagcgccggtccctgacgctcgacggcgtcgagatcctggtcctcgacgaggccgaccag
atgctcgacctcggcttcatccacgccctcaaacgcatcgtgaagatgctgccgacgcag
cgccaaagcctgttcttctcggccaccatgccgaagaacatcgccgggctcgcatcccag
tacctcaccgatccggtccaggtcgcggtgacgcccgtcgccaccacggccgagcgggtc
gagcagcaggtgatcttcgtccataccggcgccaagcaggcgctgctgggccatatcctg
cgcgatccggcgatcgagcgcgtcctcgtcttcacccgtaccaagcacggggcggaccgg
gtcgtgcgcggcctcgacaaggtcggcatcgcggcggcggcgatccacggcaacaagagc
cagccccagcgcgagcgggcgctcgccgccttcaaggacggcacctgccgggttctggtc
gccaccgacatcgccgcccgcggcatcgacgtcgagggcgtgagccacgtggtcaatttc
gacctgccgaacattcccgagagctacgtccaccggatcggccgcaccgcccgcgccggc
gcggacggcctcgccatctcgttctgcaacgacgaggagaaggcctacctgcgcgacatc
gagcgcgtgacccggcagaaggtgccggtcgcgggcttccccgagggcttcaacccgccg
tcgcgtcaggaggcggccgagatcgctcgcgaggaggagcgccggccggagcgtcagcag
cagcgtcccggcggcggtcgccagggccagcggccccgtcagcagcagggccgcccccag
cagggccggcccgaaggcggccgcgggtttggcggccagggcgcgccccgtcagggccgc
ccccaggagggccgggccgatggccgcggccacgctccgcagcacgccccgcagggtcgt
gagacccgcgcggaccggcccgcccggccgcagggtgagcgcccgaaccagggccgcccg
aaccgggacgcccggccccagcgggcggatgcccgcccgcgcagcggcggcaatgagggc
cgcagcatcggttggctggagcgggcgccccgctcctga
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