Microbacterium terricola: OAU46_06440
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Entry
OAU46_06440 CDS
T08704
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
mtec
Microbacterium terricola
Pathway
mtec03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
mtec00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
OAU46_06440
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mtec03400
]
OAU46_06440
Enzymes [BR:
mtec01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
OAU46_06440
DNA repair and recombination proteins [BR:
mtec03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
OAU46_06440
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
UYK41268
LinkDB
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Position
complement(1337371..1339845)
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AA seq
824 aa
AA seq
DB search
MAGEQVVRIEGRRVRLTNLEKVLYPATGTTKGEVIDYYSRIAGMLLPHLADRPVTRIRWP
EGVDHPSFFAKDLERGAPDWVPRVPIDHSSGAKDYPLVTGLPTLVYLAQVASLELHVPQW
RFDQRRERGNPDRIVLDLDPGPGTGLAECAQVARWARDILTGMGLDPVPVTSGSKGIHLY
ATLPGTQTSEQVTAVAHALARAIEADHPDLAVSQMAKVQRAGKVFIDWSQNNGSKTTISP
YSLRGRERPTVAAPRTWDELDDPDLRHLLIDEVLARAEEFGDLVQMLRPAASASPAPLST
YIAKRSASKTPEPVPESPHVEPTAPGEPARFVIQEHHASRLHWDFRLERDGVLVSWAVPK
GVPADTGRNHLAVMTEDHPLDYGTFEGTIPRGEYGAGTVTVWDSGTYDLEKWRDDEVIIT
VHSAPGGPLGSVRLALIRTGGEGEKSQWLLHRMKTDADGRPQKPGAPVVAADPHLPATPP
AAPAAPAVTIEAPPAAPAASIARADVAPMLATTATPALARDAAQRWGEWAEVKWDGIRAL
GVWDGERLRLFARSGTDITARYPELTRVDAGLGPERAVIDGEIVAFDGQGMPSFTRLQNR
MHLTKPREIERETVRTPIRYALFDLLAHGGTDAAPLPLRERRSILESLSAAAIAPIVVPP
VFDDVDDALAASRTFGLEGIVVKNPDSRYRRGSRSDDWLKVKLTHTQEVVIGAIRPGKGG
RTGAIGSLLVGIPGPDGLRYAGRVGTGFSEAALSRLEGMLTPLRTDENPFVGVPKADASD
ALWVRPELVGEVEYGELTPAGILRHSRWRGLRPDKAPGDVVPEV
NT seq
2475 nt
NT seq
+upstream
nt +downstream
nt
atggccggcgagcaggtggtgcgcatcgaggggcgccgcgtgcggctgaccaacctcgag
aaggtgctctaccccgccaccggcaccaccaagggcgaggtcatcgactattactcccgg
atcgcggggatgctgctgccccacctcgccgaccgccccgtgacccggatccgctggccg
gagggcgtggaccatccgtcgttcttcgcgaaggacctggagcgcggcgcgccggactgg
gtgccccgcgtgcccatcgaccactcgagcggcgctaaggactacccgctcgtgacgggc
ctgcccaccctggtctacctcgcgcaggtcgcgagcctcgagctgcacgtgccgcagtgg
cgcttcgaccagcggcgcgagcggggcaacccggaccgcatcgtcctcgacctcgacccc
gggccggggaccgggctcgccgagtgcgcccaggtggcacggtgggcccgcgacatcctc
accggcatggggctcgatccggtgccggtgaccagcggcagcaagggcatccacctgtac
gccacgctgccgggcacccagacgagcgagcaggtcaccgcggtcgcgcacgcgctcgcg
cgggccatcgaggccgatcaccccgacctggccgtgagccagatggcgaaggtgcagcgc
gcgggcaaggtgttcatcgactggagccagaacaacgggtcgaagaccacgatctcgccg
tactccctccgcggacgcgaacggccgaccgtcgccgcacctcgcacgtgggacgagctc
gacgaccccgacctgcggcacctcctcatcgacgaggtgctcgcgcgggccgaggagttc
ggcgatctcgtgcagatgctgcggccggcagcatccgcctcccccgcaccgctgtccacc
tacatcgccaagcgctccgcgtcgaagaccccggagccggtgcccgagagcccgcacgtc
gagccgacggcgccgggcgagccggcacgattcgtcatccaggagcaccacgcgtcgcgg
ctgcactgggacttccgtctcgagcgcgacggcgtcctagtgagctgggcggtgccgaag
ggcgtccccgccgacaccggccgcaaccacctcgcggtcatgaccgaggaccatcccctg
gactacggcaccttcgaggggacgatcccgaggggcgagtacggcgccggcacggtcacc
gtctgggactccgggacctacgacctggagaagtggcgcgacgacgaggtcatcatcacc
gtgcacagcgcaccgggcggcccgctcggatcagtgcggctcgccctcatccgcaccggc
ggcgagggtgagaagtcgcagtggctgctgcaccgcatgaagaccgatgcggacggtcgc
ccccagaagccgggcgcccccgtggtcgcggccgacccgcacctccccgcgaccccgccg
gcggcgcccgcggctcccgcggtgaccatcgaagccccgcctgcggcccccgcggcctcc
atcgcccgcgccgatgtcgctcccatgctcgccaccaccgcgacccccgctctcgcccgc
gacgccgcacagcgctggggcgagtgggccgaggtgaagtgggacggcatccgagcgctc
ggcgtctgggacggcgagcggctgcgcctgttcgcccgcagcggcaccgacatcaccgcc
cggtaccccgagctgacgcgcgtcgacgccggcctcggcccggagcgggcggtcatcgac
ggcgagatcgtggccttcgacggccagggcatgccgagcttcacgcggctgcagaaccgc
atgcacctgaccaagccgcgcgagatcgagcgggagaccgtgcgcacgccgatccggtac
gcgctcttcgacctgctcgcacacggcgggacggatgccgcccccctccccctccgggag
cgccgcagcatcctcgaatccctctccgccgctgcgatcgcgccgatcgtcgtgccgccc
gtgttcgacgacgtcgacgacgcgctcgcggcgagccggacgttcggcctggagggcatc
gtcgtgaagaatcccgactcgcggtatcggcgcggctcacggtcggacgactggctgaag
gtgaagctgacccacacgcaggaggtggtgatcggcgccatccgaccaggcaagggcggc
cggacgggcgcgatcggatcgctgctcgtcggcatccccgggccggacggactgcgctac
gccggtcgggtcggcacggggttcagcgaggcggcgctgagccgactggaggggatgctg
acgcctctccgcacggacgagaacccgttcgtgggggtcccgaaggccgacgcctcggac
gccctgtgggtgcggcccgagctcgtcggcgaggtcgagtacggcgagctcacccccgcg
ggcatcctgcgccactcgcgctggcgcggcctccgccccgacaaggcacccggcgacgtg
gttcccgaggtctga
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