Mycolicibacter terrae: 4434518_00842
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Entry
4434518_00842 CDS
T05465
Name
(GenBank) ATP dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
mter
Mycolicibacter terrae
Pathway
mter03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
mter00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
4434518_00842
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mter03400
]
4434518_00842
Enzymes [BR:
mter01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
4434518_00842
DNA repair and recombination proteins [BR:
mter03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
4434518_00842
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
SNV59862
UniProt:
A0A1X2DKH4
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All DBs
Position
1:889235..891520
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AA seq
761 aa
AA seq
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MSAEPFKTRVKLTNADKVLYPATGTTKADVFDYYTRIAEVMLPHIAGRPATRKRWPNGVE
QDSFFEKQLASSAPSWLRRAAVQHRSGTTTYPIIDDPDGLAWIAQQAALEVHVPQWRFEA
EWTRGGEVIKPGRSTRLVFDLDPGEGVTMSQLAEVARAIRDLMAELDLEVFPLTSGSKGV
HLYAPLDRPVASDGAVAVAKRVAQQLESAMPKLVTATMAKKLRAGKVFLDWSQNNAAKTT
IAPYSLRGREHPTVAAPRTWAELDDPKLRQLRYDEVLARVARDGDLLAGLDPPLSKPDRL
SHYRAKRDAAKTPEPVPAAAPAPGGGNSYFVIQEHHARRLHYDFRLERDGVLVSWAVPKN
LPDAPSVNHLAVRTEDHPLEYGSFEGTIPKGEYGAGTVRIWDSGSYVTEKFEDSAEKGEV
IVVLRGSRISGRYALIRTGGDQWLAHRMKDQKTFALADLAPMLATHGSVTRLDPDTWAFE
GKWDGYRLLVDADRGRVRLRSRSGRDVTGEYPQLRSLAADLAEHHLVLDGEVVALDSASV
PSFAAMQNSARSTRVEFWAFDLLYLDGRPLLRAAYRDRRRLLETLAQGTDLVVKDLLTAD
GSQALEQSRRLGWEGVVAKKWDSPYHPGRRSTAWVKEKHWRTQEVVIGGWRAGEGARGGG
IGSLLMGIPAGGKLTYVGRVGTGFTEGQLAALKKKLAPLRADESPFDAPLGRADAAGVTF
VRPSLVGEVRYSERTGDGRLRQPSWRGLRPDKTPDDVVSED
NT seq
2286 nt
NT seq
+upstream
nt +downstream
nt
atgtccgccgagccgttcaagacgcgggtgaaactgaccaacgccgacaaagtgctctac
cccgccaccggcaccaccaaagccgacgtcttcgactactacacccgcatcgccgaggtg
atgctgccgcacatcgccgggcgcccggccacccgcaaacgctggcccaacggtgtcgag
caggactccttcttcgaaaagcaactcgcgtcctcggcaccgtcctggctgcgccgcgcc
gcggtgcagcaccgctccgggaccaccacctatccgatcatcgacgaccccgacggcctg
gcctggatcgcccagcaggccgccttggaagtgcacgtcccgcagtggcgcttcgaggcg
gaatggactcgcggcggcgaggtgatcaaacccggccggtccacccggctggtgttcgac
ctggaccccggtgagggcgtgacgatgagccaactcgccgaagtggcacgcgcgatccgc
gatctgatggccgaactggacctggaggtgtttccgctcaccagcggcagcaagggcgtg
cacctctacgccccgctggatcgcccggtggccagcgacggcgccgtcgcggtggccaaa
cgcgttgcgcaacaactcgaaagcgccatgccgaagctggtgaccgccaccatggccaag
aagctgcgggccggcaaggtgttcttggactggagccagaacaacgcggccaagaccacc
atcgcgccgtattcactgcggggccgcgagcatccgacggtggccgcgccgcgcacctgg
gccgaactggacgatccgaagctgcggcagttgcgctacgacgaggtgctggctcgtgtc
gcccgcgacggcgacctgttggccgggctggacccgccgctgagcaaaccggaccgactc
agccactaccgggccaaacgcgacgcggccaagacccccgaaccggtgccggccgcagcc
ccggcgccggggggcggcaatagctacttcgttatccaggagcaccacgcccgccggctg
cactacgacttccggctggagcgcgacggcgtgctggtgagctgggcggtgcccaagaat
ctgcccgacgccccgtcggtcaaccatctcgcggtgcgcaccgaagaccacccgctggaa
tacgggagtttcgagggcaccatccccaagggcgaatacggcgcaggaacggtgcgcatc
tgggattcgggcagctatgtgaccgagaagttcgaggactccgccgaaaagggcgaggtg
atcgtcgtgttgcggggcagtcggatctcgggccgctacgcgctgatccggaccggcggc
gaccagtggctggcccaccggatgaaagatcagaagacgttcgccctcgccgacctggca
ccgatgctggccacccacggctcggtgactcgcctcgacccggacacctgggccttcgag
ggcaaatgggacggctaccggctgctggtcgatgccgaccggggccgggtgcggttgcgt
tcccgcagcggccgcgacgtcaccggcgagtacccgcagctgcggtcgctggccgccgac
ctcgccgaacaccacctcgtgctggacggagaagtcgtcgcgctcgacagcgccagcgtt
cccagcttcgccgcgatgcagaacagcgcccgctcgactcgggtggagttctgggccttc
gacctgctctacctagatggccgtccgctgctgcgcgcggcctaccgggaccgtcgccgc
ctgctggaaacactcgcgcaggggactgatttggtggtcaaggacctgttgaccgccgac
ggctcccaggcgctcgaacagtcccgccggctgggttgggagggcgtggtggccaagaaa
tgggactcgccctatcacccggggcgccggtcgacggcctgggtcaaggagaagcactgg
cggacccaggaggtggtgatcggcggctggcgggccggtgagggcgcccggggcgggggg
atcgggtcgctgctgatgggcattccggcgggaggcaagctcacctacgtcggtcgggtg
ggcaccggcttcaccgagggccaactggcggcgctgaagaagaagctggcgccgctgcgc
gccgacgaatcacccttcgacgcgccgctcggccgggccgacgccgccggggtcacgttc
gtgcgaccgagcctggtgggggaggtgcgctacagcgagcgcaccggcgacggtcggctg
cgccaaccgagctggcgcggactgcggcccgataagacgcccgacgacgtggtgagtgag
gattga
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