Mycolicibacter terrae: 4434518_00953
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Entry
4434518_00953 CDS
T05465
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor Mfd
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mter
Mycolicibacter terrae
Pathway
mter03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mter00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
4434518_00953 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mter03400
]
4434518_00953 (mfd)
Enzymes [BR:
mter01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
4434518_00953 (mfd)
DNA repair and recombination proteins [BR:
mter03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
4434518_00953 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
AAA_22
DUF3638
Motif
Other DBs
NCBI-ProteinID:
SNV60979
UniProt:
A0A1X2DK85
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All DBs
Position
1:998939..1002589
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AA seq
1216 aa
AA seq
DB search
MTATGLAPVQTPIAGLVDAALSAPTFADLIAHAGDRPAELNLVGPAAARPFAAAALARNS
ALLVVTATGHEADDLTSELRGVYGDTVALFPSWETLPHERLSPGVDTVGARMLLLRRLAR
PDDARLGPPLRVVVTTARSLLQPLIPELEAIEPVILAVGDETPFEAVIARLVELAYTRVD
LVGKRGEFAVRGGILDVFPPTAEHPVRVEFWGDEITEMRPFSVADQRSIPEIEAGTVVAV
ACRELLLTDDVRARAAALSAQAHDRSHVDDNAVTGTVGDMLAKLAEGIPVDGMEALGPVL
RPGRQALLTDQLGARTPVLVCDPEKVRARGADLIKTGREFLEASWSVAAIGGDAPIDIEQ
LGGSGFRELDEVAEAATAAGHPWWTLSQLSDEAAIQLDVRPSPSARGRQRDIDEIFAMLR
AHTATGGAAAVVTPGVGTARRLVEQLAESDTAATLLEPGAAPKPGVVGVLAGPLHEGLVI
AGANLVIVTETDLTGNRVAGPEGKRLAAKRRNAVDPLALTAGDLVVHDQHGIGKFVEMTE
RTVGGARREYLVLEYASGRRGSAGNTDKLYVPMDSLDQLSRYVGGQAPALSRLGGSDWSQ
TKTKARKAVREIADELVALYAKRQAAPGHAFAPDTPWQAEMEDAFGFTETVDQLTAISEV
KADMEKPVPMDRVVCGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFATR
MAGFPVVVKGLSRFTDAAESKAVIDGLADGGVDVVIGTHRLLQTGVRWKDLGLVIVDEEQ
RFGVEHKEHIKALRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEDRYPVLTYVGG
HDDKQVAAALRRELLRDGQVFYVHNRVSSIDAAAARVRALVPEARVAVAHGQMPEELLET
TVQGFWNREYDILVCTTIIETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYA
YFLYPRDTPLTETAHDRLATIAQNNELGAGMAVAMKDLEIRGAGNVLGVEQSGHVAGVGF
DLYVRLVGEAVEAYRAAFNGETVTTEEVKDVRIDLPVDAHLPPEYINSDRLRLEAYRRLA
GALDDAAINAVVDELTDRYGPLPEPAGRLVAVARLRLSCRAVGITEVSAASATTLRLAPI
TLADSAQLRLKRLHPSASYRATTATVQVPIPRAGGGVGAPRIRDVELVQMVADLISALDG
KPRGLIDVTGAVPAVR
NT seq
3651 nt
NT seq
+upstream
nt +downstream
nt
atgaccgcaacggggctcgcacctgtccagaccccgatcgcggggctcgtcgacgccgca
ctgagcgcgccgaccttcgccgatctcatcgcgcacgccggtgaccggccggccgagctc
aacctggtcggcccggccgcggcccggcccttcgccgccgccgcgctggcccgcaacagc
gcgctgctggtggtcaccgccaccggccacgaggctgacgatctgaccagcgaactgcgt
ggggtctacggcgacacggtggcgctgttcccgtcctgggagacgctgccgcacgagcgg
ctctcacccggcgtggacaccgtgggggcccggatgctgctgctgcgcaggctggcgcgg
cccgacgacgcccggctggggccgccgctgcgtgtggtggtgaccacggcccgttcgctg
ctgcaaccgttgatcccggagctggaggcgatcgaaccggtcatcctggccgtcggcgac
gagacacccttcgaggcggtgatcgcccggctggtcgagctggcctacacccgggtggac
ctggtcggcaaacgcggcgagttcgcggtgcgcggcgggatcctcgacgtcttcccgccg
accgccgagcacccggtgcgcgtcgagttctggggcgacgagatcaccgagatgcggccg
ttctcggtggccgaccagcgctccatccccgagatcgaggcaggcaccgtggtggcggtg
gcgtgccgggagctgctgctcaccgatgacgtgcgggcccgggccgcagcgctgtcggca
caagcacacgaccggtcgcacgtcgacgacaacgccgtcaccggcaccgtcggtgacatg
ctggccaagctcgccgagggcatcccggtcgacggcatggaggcgctgggcccggtgctg
cggcccggccgtcaggcactgctgaccgaccagctcggcgcgcgcaccccggtgctggtc
tgcgatccggagaaggtacgcgcccgcggcgcggacctgatcaagaccggccgcgaattc
ctggaggcgtcctggtcggtcgcggcgatcggcggcgacgcgccgatcgacatcgagcag
ctgggtggatcgggattccgtgagctcgacgaggttgccgaggctgcgacggccgcggga
catccgtggtggacgttgagccagctctccgacgaggcggcgatccaactcgacgtgcgc
ccgtcgccgtcggcgcgcggccggcaacgcgatatcgacgagatcttcgccatgctgcgc
gcgcacaccgcgaccggcggcgcggcagcggtcgtgacccccggcgtcggtacggcgaga
cggctggtggagcagctcgccgaatccgacaccgcggcaaccttgttggagcccggcgcg
gcacccaagcccggcgtggtcggggtgctggccggtcccctgcacgagggtctggtgatc
gcgggcgcgaacctggtcatcgtcaccgagaccgacctgaccggcaaccgggtcgccgga
cccgagggcaagcggctggcggccaagcgccgcaacgccgtcgacccgctggcgctgacc
gccggcgacctggtggtgcacgaccagcacggcatcggcaagttcgtggagatgaccgaa
cgcaccgtgggtggggcgcggcgcgaatatctggtgctcgaatacgcgtcgggccggcgg
ggcagcgcgggcaacaccgacaagctctatgtgccgatggactccctggaccagttgtcc
cgctacgtcggcgggcaggcccccgcgctgagcaggctcggcggcagtgactggagccag
accaagaccaaggcccgcaaggcggtgcgggagatcgccgacgaactcgtcgcgctctac
gcgaagcgccaggccgcacccggacacgccttcgccccggacaccccgtggcaggccgag
atggaggacgcgttcgggttcaccgagaccgtcgaccagctcaccgccatcagcgaggtc
aaggccgacatggagaaaccggtaccgatggaccgggtggtctgcggcgacgtcggttac
ggcaagaccgagatcgcggtgcgggcggcgttcaaagccgtccaggacggcaagcaggtc
gcggtgctggtgcccaccacgctgctggccgatcagcacctgcagacgttcgccacccgg
atggccgggttcccggtcgtcgtcaagggcctgtcccggttcaccgacgccgccgagtcc
aaagcggtgatcgacgggctggccgacggcggtgtcgacgtggtgatcggcacccatcgg
ctgctgcagaccggggtgcgctggaaagacctcggcctggtgatcgtcgacgaggagcag
cggttcggcgtcgagcacaaggagcacatcaaggcgctgcgcacccacgtcgatgtgctc
accatgagtgccaccccgatcccgcgcaccctggagatgagtctggccggcatccgggag
atgtcgacgatcctcaccccgcccgaagaccgctacccggtgctgacctacgtcggcggc
cacgacgacaagcaggtggcggccgccctgcgccgggaactgctgcgcgacggccaggtc
ttctacgtgcacaaccgggtcagctccatcgacgcggccgccgcccgggtgcgcgcgctg
gtgcccgaggcccgggtcgcagtcgcgcacggccagatgcccgaggaactgctggagacc
accgtgcagggcttctggaaccgcgagtacgacatcctggtgtgcaccacgatcatcgag
accggcctggacatctccaacgccaacacgctgatcgtcgagcgcgccgacaccttcggg
ctctcccagctgcaccagctgcggggccgggtgggccgcagccgcgaacgcggctacgcc
tactttctctacccacgggacacgccgctgaccgagaccgcccacgatcggctggccacc
attgcgcagaacaacgaactcggcgccgggatggcggtggcgatgaaggacctggagatc
cgcggcgccggcaacgtgttgggggtggagcagtccgggcacgtcgccggggtggggttc
gacctgtatgtgcggttggtcggcgaggccgtagaggcctatcgagcggcgttcaacggc
gagacggtcaccaccgaggaggtcaaggacgtccgcatcgacctgcccgtcgacgctcac
ctgccgccggagtacatcaactccgaccggctgcggctggaggcctaccggcggttggcc
ggcgccctcgacgacgccgccatcaacgcggtcgtcgacgagctgaccgaccgctacggg
ccgctgcccgagccggcgggccggctggtcgcggtggcccggctgcggctgtcgtgccgc
gcagtgggcatcaccgaggtctcggcggcgtcggcgacaacgctgcggctggccccgatc
accctggccgactccgcccagttgcggctcaagcgactgcacccgtccgccagttaccgc
gccaccacggccaccgtgcaggttccgataccgcgggccggcggtggtgtcggcgcgccc
cgcatccgcgacgtcgaactggtccagatggtggccgatctgatctcggcgctggacggc
aagccgcggggcctcatcgacgtcaccggcgcggtgcccgcagtacggtaa
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