Micrococcus terreus: R3I42_01850
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Entry
R3I42_01850 CDS
T09505
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
mteu
Micrococcus terreus
Brite
KEGG Orthology (KO) [BR:
mteu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mteu03019
]
R3I42_01850 (hrpA)
Enzymes [BR:
mteu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
R3I42_01850 (hrpA)
Messenger RNA biogenesis [BR:
mteu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
R3I42_01850 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
DEAD
HA2_C
AAA_22
AAA_19
HA2_N
SLFN-g3_helicase
nSTAND3
AAA_30
ResIII
SRP54
T2SSE
ABC_tran
AAA_16
AAA_25
PhoH
TsaE
Motif
Other DBs
NCBI-ProteinID:
WOO97939
LinkDB
All DBs
Position
complement(400718..404878)
Genome browser
AA seq
1386 aa
AA seq
DB search
MSQPAIAPQITYPEHLPVSARRDEIKEAIERHQVVVVAGETGSGKTTQLPKMCLELGLAE
HGMIGHTQPRRIAARSVAERLAHELDTEIGRTVGYQVRFTAETSKQTQVKVMTDGILLAE
IQQDRMLSRYSVIIIDEAHERSLNIDFLLGYLQRLLPQRPDLKVIITSATIDPDSFARHF
GRPLTEQDSGQDRERAVDGVIPAPVIEVSGRTFPVEIRYRPLSAPAEADDEYEETDDAEE
TRDPVDAVCDAVDELSRETPGDILVFFPGEREIRDAAEALAPRVAANRRLAGTEILPLYG
RLSMAEQHRVFSTGTSRRIVLATNVAETSLTVPGIKYVIDTGTARISRYSHRTKVQRLPI
ERISQASANQRSGRSGRTSDGIAIRLYSEEDFASRPEFTDPEILRTNLAAVILQMCAMGV
ARTPADVADFPFLQPPDTRQVTDGATLLTELGALNSGQPERDAQGRTRTFPKGTITPVGR
KLARLPVDPRLGRMILEAGARGCVREVMVLAAALTIQDPRERPTEQRAAADEQHARFTDA
NSDFTGLLNLWAYLREQQKALSGNQFRRMCRAEHINYLRVREWQDLVQQLRQLAKSVDIS
VSAGPVDPVGQHEPVHRSILTGLLSHIGSWDERRREYAGARNTRFAVFPGSALFKKRHPF
VMAAELVETSRLWARMVARIEPEWAEEAAGSLAKHTYNEPHWSRRAGSVVAREKVTLFGV
TLIPDRAVRYGRIDPGLSRELFIRHALVEGDWRTRHRFYARNQQALAEVEELESRLRRRD
LRISDEDLFSFYDERVPAHVVSERHFDSWWKKARHQTPELLDISTESLLAADAEELDTDQ
FPTTFHHPTDGGGIELDLEYQFNPAAGPQESDGITVTIPVLLLNQMDPERFRWLVPGLRT
ELVTALIRSLPKAVRKNFVPAPDVARTAVEQLDQEADPLHDDLLPALELTLRRMRGVVIP
PDSWNLTTVPDHLRMDYRVVDSRGAVVGAGPDLAALQDRLAQANRTAIAESLAQAGGSDL
LPDGGTPVPAPAPGGRGPGTGAGRRGGKNAAGAAGSVPGGTPGDRAGRGAGPSSGAHPGA
GTSAVAERHGMTAWEVGDLPRRVESTVRTGQSVQQITGYPALVAETLPDGSPAAGLTVMR
TPEDQRTAHRGGVGALLLAQVPSPQRYVLDHLDNREKLTFTQNPHGSVDQLVADCTRAAI
DRLLPEDLPYTEAEFRQLFERVRAELIDTVFAVTAVVERILSRGVQVRKALKGTVSLAMA
PALNDIKSQLGQLVFPGFVATTGWAHLQHLPRYLEGMLKRIEKLQAGGAVQRDARDMAVV
QELEDAFDAAVQQVRARRPGQPIPAALDQVRWMIEELRVSYFAQELGTAVSVSEKRVRQA
LKAAAG
NT seq
4161 nt
NT seq
+upstream
nt +downstream
nt
atgtcacagcctgcgatcgcaccccagatcacctatcccgagcacctgccggtctctgcc
cgccgggacgagatcaaggaggcgatcgagcgtcaccaggtggtcgtcgtcgccggtgag
accgggtccggcaagaccacccagctgcccaagatgtgcctggagctgggcctggccgag
cacgggatgatcgggcacacccagccccgccgtatcgcggcacgatctgtggccgagcgc
ctggcccacgagctggacaccgagatcgggcgcacggtcggctatcaggtccgcttcacc
gccgagacctcgaagcagacccaggtcaaggtgatgaccgacggcatcctgctggccgag
atccagcaggaccggatgctctcgcggtacagcgtgatcatcatcgacgaggctcacgaa
cgctctctgaacatcgacttcctgctgggctacctgcagcggctgctcccccagcgtccg
gatctgaaggtcatcatcacctcggccacgatcgatccagactccttcgcccgccacttc
ggccgacccctgaccgagcaggactccgggcaggaccgcgagcgcgccgtggacggagtg
atcccggctccggtgatcgaggtgtccggccgcaccttccccgtggagatccgctaccgt
cccctctccgcaccggcggaagcggatgacgagtacgaggagaccgacgatgccgaggag
acccgcgatcccgtggacgcggtctgcgatgcggtggacgagctctcccgggagactccg
ggtgacatcctggtgttctttcccggcgagcgcgagatccgtgacgcggccgaggccctg
gcaccccgggtggcggccaatcggcgactggccggcaccgagatcctgccgctctacggt
cggctctccatggccgagcagcaccgggtgttcagcaccggcacgagcaggcggatcgtg
ctggccacgaatgtggccgagacgtcactgaccgtgccgggcatcaagtacgtgatcgac
accggcaccgcgcgcatctcccgctattcacaccgcaccaaggtccagcggctgccgatc
gagcggatcagccaggccagtgccaaccagcgctcgggccgctccggccgcaccagcgac
ggcatcgccatccggctgtactcggaggaggacttcgcctcccgcccggagttcaccgac
ccggagatcctgcgcaccaatctggccgccgtgatcctgcagatgtgcgccatgggcgtg
gcccggaccccagcggatgtggccgacttcccgttcctgcagcccccggacacccgtcag
gtcaccgacggcgccaccctgctcaccgagctgggcgccctgaactccggtcagccggag
cgggatgcgcagggccggacccgcaccttccccaagggcaccatcactccggtggggcgg
aagctggcacggctgcccgtggacccccgtctgggccggatgatcctggaggccggcgcc
cggggatgcgtgcgcgaggtcatggtcctggcagcggcgctgaccatccaggatccccgc
gagcgtcctaccgaacagcgggccgccgcggatgagcagcacgcccgcttcaccgatgcg
aactcggacttcaccgggctgctgaacctctgggcgtatctgcgcgagcagcagaaggcg
ctctccggcaaccagttccgcaggatgtgccgcgccgagcacatcaactatctgcgggtg
cgcgagtggcaggacctggtccagcagctgcgccagctggcgaagtccgtggacatctcg
gtctcggccggccccgtggacccggtgggtcagcatgaaccggtgcaccgctccatcctc
accggcctgctctcgcacatcggctcctgggacgaacgcaggcgggagtacgccggcgcc
cgcaacacccggttcgcggtgttccccggctcggcgctgttcaagaagaggcacccgttc
gtgatggccgccgagctggtggagacttcccggctctgggcccgcatggtggccaggatc
gagccggagtgggcggaggaggccgccgggtccctggccaagcacacctacaacgagccg
cactggtcccgccgcgccggctccgtggtggcccgggagaaggtcacgctgttcggggtc
accctcatcccggaccgcgcggtgcgctacgggaggatcgacccgggcctctcccgtgag
ctgttcatccggcacgccctggtggagggcgactggcgcacccggcaccgcttctatgcc
cgcaaccagcaggccctggccgaggtggaggagctggagtcccggctgcgccggcgtgac
ctgcgcatctcagacgaggacctcttctccttctacgatgagcgcgtcccagcccatgtg
gtctccgaacggcacttcgactcctggtggaagaaggctcggcatcagaccccggagctg
ctggacatcagtaccgaatccctgctcgctgctgacgccgaggagctggacaccgatcag
ttccccaccaccttccaccaccccacagatggcggtggaatcgagctggacctggagtac
cagttcaacccggccgccgggccgcaggagtcggacggcatcacggtgaccatcccggtg
ctgctgctgaaccagatggaccccgagcgattccgctggctggtgccggggctgcgcacc
gaactggtcaccgcactgatccgttccctgcccaaggcggtgcgcaagaacttcgtgccc
gccccggacgtggcccgcacggccgtggagcagctggaccaggaggcagatcccctccac
gacgatctgctgcccgccctggagctgaccctgcgccggatgcgcggggtggtcatcccc
ccggactcctggaacctgaccaccgtcccggaccacctgcggatggactaccgcgtggtg
gactcccgcggagccgtggtgggcgccggtccggacctcgccgccctgcaggaccggctg
gcccaggccaaccgcacggccatcgccgaatccctcgcccaggccggcggctcagacctt
cttcccgacggcggcacacccgtcccagcgcccgcccccggagggcgtgggccgggcacc
ggtgccgggcgccgcggtgggaagaacgctgcaggtgccgcgggctccgtgccggggggc
acccccggtgaccgggcaggccgaggtgccgggccgtcgtcgggagctcatccaggggcc
ggcacctccgcggtggccgagcgtcacgggatgaccgcctgggaggtcggggatctgccg
cgcagggtggagagcaccgtgcggaccgggcagagcgtgcagcagatcaccgggtacccg
gcgctggtggccgagaccctgccggacggatcccccgcggccggcctgaccgtgatgcgc
acaccggaggaccagcgcaccgcgcaccgtggcggagtgggcgcgctgctgctggcccag
gtgcccagcccgcagcgctacgtgctggaccacctggacaaccgggagaagctgaccttc
acccagaacccccacgggtcggtggaccagctggtggccgactgcacccgtgcggcgatc
gaccggctgctgccagaggatctgccgtacaccgaggccgagttccgccagctcttcgag
cgggtgcgggccgaactgatcgacaccgtgttcgcggtgaccgccgtggtcgagcggatc
ctctctcggggcgtacaggtgcgcaaggccctcaagggcaccgtctcactggccatggcc
ccggcactgaacgacatcaagtcccagctggggcagctggtcttccccgggttcgtggcc
accaccggatgggcccatctgcagcatctgccccgctacctggaagggatgctgaagcgg
atcgagaagcttcaggccggcggtgccgtgcagcgcgacgcccgggacatggccgtggtc
caggagctggaggacgccttcgacgccgccgtgcagcaggtgcgggcacgccgtccgggg
cagccgatcccggccgcgttggaccaggtccgatggatgatcgaggagctgcgggtgagc
tacttcgcccaggagctgggcaccgcggtctccgtgtccgagaagcgggtgcgccaggcg
ctcaaggcagccgccggctga
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