Methylophaga thalassica: VSX76_13550
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Entry
VSX76_13550 CDS
T09743
Name
(GenBank) DEAD/DEAH box helicase
KO
K05590
ATP-dependent RNA helicase SrmB [EC:
5.6.2.7
]
Organism
mtha
Methylophaga thalassica
Brite
KEGG Orthology (KO) [BR:
mtha00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
mtha03009
]
VSX76_13550
Enzymes [BR:
mtha01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
VSX76_13550
Ribosome biogenesis [BR:
mtha03009
]
Prokaryotic type
rRNA helicases
VSX76_13550
BRITE hierarchy
Motif
Pfam:
DEAD
Helicase_C
ResIII
UTP25
SNF2-rel_dom
AAA_22
Motif
Other DBs
NCBI-ProteinID:
WVI84789
LinkDB
All DBs
Position
1:2493835..2495046
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AA seq
403 aa
AA seq
DB search
MSFEDLLLEDSLLSAISAQGYTEPTPIQTETIPLILAGQDVLACAATGTGKTAAFVLPLL
QKLWDRKQRSHEPVALILAPTRELAFQIQHVIKTFSKQDPIDIAMITGGQAPAAQQKFLD
EGCDVIIATPGRLLNLVEQDQADLSLIEFVVIDEADRMLDMGQGPDVATLLASITTAFQT
CLFSATLAGAGVEIFANTLLPDATRVDVNASNQYAEQVQQRVYLADNREHKQALLTAIIN
SDDCKSALVFCNKKERADEVADYLQSQNISAQVVHGEFSQADRRERTRKFRQGKTKVLVA
TDVASRGLDLPQVSHVINYDVPFRGDIYIHRVGRTGRAGQSGIAVNLVEAHDQKNLERIQ
HHIGQTLPVVKMKGLAPKGKANKQKSKKSASNRYIAKKDRAPE
NT seq
1212 nt
NT seq
+upstream
nt +downstream
nt
atgtcatttgaagatctcttactagaagacagcctgttaagtgcaatttctgctcaaggc
tatactgaacccaccccaatacaaacagaaactataccgcttattctggcaggtcaggat
gtactggcctgtgcagcgacaggtacaggaaaaacagcggcctttgtgctgcctttattg
caaaaactgtgggatagaaagcagcgttcgcatgaacctgttgccttaattctggcgccg
acacgtgagctggcatttcagatccagcacgtgataaaaacatttagtaaacaggatcct
attgatattgcgatgattaccggcggtcaggcgcccgcagcacaacaaaagtttttggat
gaaggttgtgatgtcattatcgccacacctggtcgtctattaaatttagttgaacaagat
caggccgatttatcactgattgaatttgtggtgattgatgaagctgatcgtatgctggat
atgggacaaggtccggatgtagcgacactgttagcctccattacaaccgcttttcaaacc
tgtttattttccgccaccctggctggtgccggtgttgagatttttgctaataccttattg
cctgatgccacacgagtggatgtgaatgcctctaatcagtacgcagagcaagtacaacaa
cgtgtttatctggctgataatcgtgagcataaacaggctttattaacagccattatcaac
tcagatgactgtaaaagtgctttagtgttttgtaataaaaaagaacgcgctgatgaagta
gctgactatctgcagtcacaaaacatttctgcccaagttgtgcatggtgagttttcacaa
gcagatcggcgcgaacgtacccgcaaatttcgccagggtaaaaccaaagtattagtggcg
actgacgttgcctctcgcggcctggatttaccgcaggtaagccatgtcattaattatgac
gtgccattccgcggcgacatctatattcaccgagtgggcagaaccggtcgggccgggcag
tcagggattgctgtcaatctagtggaagcgcacgatcaaaaaaacctggaacgtatccag
catcatatcggccaaactctgccggttgtcaaaatgaaaggtctggctccaaagggtaaa
gccaacaaacaaaaaagcaaaaaatcagcaagcaatcgctatatcgctaaaaaagatcgt
gctccggaataa
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