Mycolicibacterium thermoresistibile: 4412656_03630
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Entry
4412656_03630 CDS
T05542
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor Mfd
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mthn
Mycolicibacterium thermoresistibile
Pathway
mthn03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mthn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
4412656_03630 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mthn03400
]
4412656_03630 (mfd)
Enzymes [BR:
mthn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
4412656_03630 (mfd)
DNA repair and recombination proteins [BR:
mthn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
4412656_03630 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
DUF3638
MFD_D3
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
SNW19784
LinkDB
All DBs
Position
1:complement(3844320..3847994)
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AA seq
1224 aa
AA seq
DB search
MTASGHPHVQTPIAGLVDLALRDPSLQDVAARAADRPAELSLVGPASARVFVAAALARSG
PLLVVTATGREAEELTAELRGVYGDEVAMFPSWETLPHERLSPGVDTVGTRLMVLRRLAH
PDDARLGPPLRVVVTTTRSLVQPMAQRPDEVRQTEPVTLTVGADADFDETIARLVELAYT
RVDMVGRRGEFAVRGGILDVFPPTAEHPVRIEFWGDEVSEMRMFSVADQRSIPEISIDTV
VAMPCRELLLTDEVRERAVKLAEQHPRQENTLPGTLPDMLAKLAEGIPVDGMEALLPLLR
PGELSMLTDHLPAGAPVLVCDPEKVRTRAADLISTGQEFLEASWSAAAIGGDAPIDLDAL
GASGFLDLDDARASAAEAGHPWWTLSQLSSESAIELDLRPVPAARTKSAVTEIFAMLRAH
VTTGGYAAVVTPGAGTAQRIVEQLGESETPARRLEPGAGLEPGVVGVLQGPLHDGLVLPG
ANLVVITEADLTGNRVTAQQGRKLAPKRRNVVDPLALTAGDLVVHDQHGIGRFVEMVERT
VGGARREYLVLEYASNRRGTGGGHTDKLYVPMDSLDQLSRYVGGDSPSLSRLGGSDWTNT
KTKARKAVREIAAELVALYAKRQSAPGHAFSPDTPWQREMEDAFGFTETVDQLTAIEEVK
ADMEKPVPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFTERM
AGFPVTIKGLSRFTSPSESRAVLEGMADGSVDIVIGTHRLLQTGVRWKDLGLVIIDEEQR
FGVEHKEHIKSMRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGPY
DDKQIAAALRRELLRDGQAFYIHNRVSTIDKAAARVRELVPEARVVVAHGQMNEEALERT
VEGFWNREYDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYAY
FLYPPDAPLTETAYDRLATVAQNNELGAGMAVAMKDLEIRGAGNVLGVEQSGHVAGVGFD
LYVRLVGEAVEAYRAAAEGKTVATPEEPKDIRIDLPIDAHLPPEYIASDRLRLEAYRRLA
SAPDDDGIAAVVDELVDRYGPLPEPAQRLVAVARLRLLCRRFGVTEVSAPSEATVRVAPL
TLQDSQQVRLKRLYPGAHYRATTSTVQVTIPRSGGIGSPRIRDLELAQMVAGLLLMLHGD
TEGEVDITRFGGAAAVTSDKRRPR
NT seq
3675 nt
NT seq
+upstream
nt +downstream
nt
atgaccgcatcggggcacccccatgtccaaaccccgatcgcggggctggtggatctggca
ttacgcgacccttctctgcaggatgtcgctgcccgagccgccgatcgtccggctgaactg
tcgctggtaggccccgcgtccgcacgggtgtttgtcgcagccgcactcgctcgatccggc
ccgctgctggtggtcaccgccaccggccgggaggccgaggagctgaccgccgaacttcgt
ggcgtgtacggcgacgaagtcgccatgttcccgtcctgggagacgttgccgcacgagcgg
ctgtcgcccggggtggacaccgtcggcaccaggctgatggtgctgcgccggctggcccat
cccgacgacgcccggctgggcccgccgctgcgggtcgtcgtcaccaccacccgttcgctg
gtgcagccgatggcccagcggcccgacgaggtgcggcagaccgagccggtcaccctcacc
gtcggggcggacgccgacttcgacgagacgatcgcccggctggtcgaactggcctacacc
cgggtggacatggtgggccggcgcggcgagttcgccgtccgcggcggcatcctcgacgtc
ttcccgccgaccgccgaacatccggtccggatcgagttctggggcgacgaggtctccgag
atgcggatgttctcggtggccgaccaacggtccatcccggagatcagcatcgacaccgtc
gtcgcgatgccgtgccgggaactgctgctcaccgacgaggtgcgggagcgggccgtcaaa
ctcgccgagcagcaccccaggcaggagaacaccctgcccggcaccctgccggacatgctg
gccaaactcgccgagggcatcccggtcgacgggatggaggcgctgttgccgctgctgcgg
ccgggtgagctgtcgatgctgaccgaccatctgcccgccggcgcgccggtgctggtgtgc
gacccggagaaggtccgcacccgcgccgccgatctgatctccaccgggcaggagttcctg
gaggcgtcctggtcggccgcggccatcgggggtgacgcccccatcgatctcgacgcgctg
ggcgcgtcgggcttcctcgatctcgacgacgcccgggcgtcggccgcggaggccggccac
ccgtggtggacgctgagccagctcagcagcgagtcggcgatcgagctggatctgcggccg
gtgcccgcggcgcgcaccaagagcgcggtcaccgagatcttcgcgatgctgcgcgcccac
gtcaccaccggcgggtatgccgcggtggtcacccccggcgccggcaccgcccaacggatc
gtcgaacaactcggcgaatccgagaccccggcaagacgtctggagccgggtgccgggctc
gaacccggtgtggtcggggtgctgcagggcccgctgcacgacggtctggtgctgcccggc
gcgaacctggtggtgatcaccgaggcggatctgaccggcaaccgggtgaccgcccagcag
ggcaggaagctggcgcccaagcggcgcaacgtggtcgacccgctggcgctgaccgccggg
gacctggtggtgcacgatcagcacggcatcggccggttcgtcgagatggtggagcgcacc
gtgggcggtgcccgccgcgagtacctggtgctggagtacgcgtcgaaccggcgcggcacc
ggcggcggccacaccgacaagctctacgtgccgatggactcgctggatcagctgagccgc
tacgtcggcggggactcgccgtcgctgtcgcggctcggcggcagcgactggaccaacacc
aagaccaaggcgcgtaaggcggtccgggagatcgccgccgaactcgtcgcgctgtacgcc
aaacgccagtccgcgcccggccacgcgttcagcccggacaccccgtggcagcgcgagatg
gaggacgcgttcggcttcaccgagacggtcgatcagctcaccgcgatcgaagaggtcaag
gcggacatggagaaaccggtcccgatggaccgggtgatctgcggcgacgtcgggtacggc
aagaccgagatcgcggtgcgggccgcgttcaaggccgtgcaggacggcaagcaggtcgcg
gtgctggtcccgacgacgctgctggccgaccagcatctgcagacgttcaccgagcggatg
gccggtttcccggtcacgatcaaggggctgtcgcggttcaccagccccagcgaatcccgc
gcggtgctcgagggcatggccgacgggtcggtcgacatcgtgatcggcacgcaccggctg
ctgcagaccggggtgcgctggaaggacctcgggctggtcatcatcgatgaggagcagcgc
ttcggcgtcgaacacaaagagcacatcaagtcgatgcgcacccatgtcgacgtgctgacc
atgagcgccaccccgatcccgcgcaccctggagatgagcctggccgggatccgggagatg
tcgacgatcctcaccccgcccgaggagcgctacccggtgctgacctatgtcggcccgtac
gacgacaagcagatcgccgccgcgctgcgccgcgaactgctgcgcgacgggcaggcgttc
tacatccacaaccgggtcagcaccatcgacaaggcggccgcgcgggtacgtgaactggtg
cccgaggcgcgggtggtcgtcgcgcacggccagatgaacgaggaggccctggagcgcacc
gtcgaggggttctggaaccgcgaatacgacatcctggtgtgcaccacgatcgtggagacc
gggctggacatctccaacgccaataccctgatcgtggagcgggccgacaccttcggcctc
tcccagctgcaccagctgcgcggccgggtggggcgcagccgggaacgcggctacgcctac
ttcctgtatccgccggacgcgccgctcaccgagaccgcatacgaccggctggccaccgtc
gcgcagaacaacgaactgggcgccgggatggcggtggcgatgaaggacctggagatccgc
ggcgccggaaacgtgctcggcgtcgagcagtccgggcatgtcgccggggtcggcttcgac
ctgtacgtgcggctggtcggcgaggccgtcgaggcgtaccgggccgctgccgaaggcaaa
accgttgccactccggaggaaccgaaggatatccggatcgatctgccgatcgacgcgcat
ctgccgccggagtacatcgccagcgaccggctccggctggaggcctaccgcaggttggcg
tctgccccggacgacgacgggatcgccgcggttgtcgacgagctggtcgaccggtatgga
ccgttgcccgaaccagcgcagcggctggtggcggtggcacggttgcggctgctgtgccgg
cggttcggcgtgaccgaggtgagcgccccgtcggaggccacggtccgggtggcgccgctg
accctgcaggactcccagcaggtgcggctcaagcggctgtatccaggagcgcactaccgg
gcgacgacatcgactgtgcaggtgaccattccgcggtccggcggtatcggctcaccccgg
atccgggatctggagctggcccagatggtggctggattgttgctgatgctccatggcgac
accgagggcgaagttgatataaccaggttcggaggtgcagcggctgtgacgagcgacaag
cggcgaccacgatga
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