Mycolicibacterium thermoresistibile: 4412656_03803
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Entry
4412656_03803 CDS
T05542
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
mthn
Mycolicibacterium thermoresistibile
Pathway
mthn03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
mthn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
4412656_03803
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mthn03400
]
4412656_03803
Enzymes [BR:
mthn01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
4412656_03803
DNA repair and recombination proteins [BR:
mthn03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
4412656_03803
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
RNA_ligase
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
SNW19955
LinkDB
All DBs
Position
1:complement(4021237..4023537)
Genome browser
AA seq
766 aa
AA seq
DB search
MERYERVKLTNPDKVLYPASGTTKAEVFEYYIEIADAMLPHIAGRPVTRKRWPNGVHEAS
FFEKQLASSAPDWLARGTITHKSRTTTYPIIDTREGLAWIAQQAALEVHVPQWRFVAGGR
SGRDGKLTMGPATRIVFDLDPGEGVTMRELCRVAHEVRDLITDIGLDTFPLTSGSKGLHL
YVPLDEPISSQGASVLAKRVALQLEKAMPTLVTATMTKSVRTGKVFLDWSQNNAAKTTIA
PYSLRGREHPTVAAPRTWDEIDDPDLRHLTFTEVLDRVDRLGDLLAPMDADAPVADRLSS
YRSMRDPARTPEPVPKTVAATGDDNRFVIQEHHARRLHYDLRLERDGVLVSWAIPKNLPD
DPSVNHLAVHTEDHPLEYLTFHGEIPEGEYGGGKMLIWDTGTYEAEKFNDVGPDEDAEGG
EVIITLHGEKISGRYALIQTDGKNWLAHKMKDQKPRTEIRPEDFTPMLATHGSVARLSAE
THAFEGKWDGYRLLVHIDHGKLCLRSRSGRDVTKEFPTLQAMAADLADHQVVLDGEVVAL
DGSGVPSFGEMQNRARATHIEFWAFDILWLDGRSLLRAKHSDRRRVLLALAEKDGLIVPD
LLPGDTGAEALEYARERGFEGVVAKRHDSIYQPGRRSKAWIKDKIWNMQEVVIGGWRKGE
GGRSSGIGALVLGIPTEGGLQFVGRVGTGFTDKQLAELKQLLAPLETDESPFVDPLPRPD
AKGVTYVRPELVGEVRYSERTADNRLRQPSWRGLRPDKSPDEVRWE
NT seq
2301 nt
NT seq
+upstream
nt +downstream
nt
atggagcgctatgagcgggtgaaactcaccaaccccgacaaggtgctctacccggcctcg
ggcaccaccaaggccgaggtgttcgagtactacatcgagatcgccgacgcgatgctgccg
cacatcgccggtcgcccggtcacccgcaagcgctggcccaacggcgtgcacgaggcgtcg
ttcttcgagaagcagctcgcctcgtcggcgccggactggctggcccgcggcaccatcacc
cacaaatcccggaccaccacctatccgatcatcgacacccgcgaggggctggcctggatc
gcccagcaggccgcgctggaggtgcatgtcccgcagtggcggttcgtggcgggtgggcgc
agcgggcgcgacgggaagttgacgatggggccggccacccgcatcgtgttcgacctcgac
ccgggcgaaggggtcacgatgcgcgaactgtgccgggtggcccacgaggtgcgcgatctg
atcaccgacatcggcctcgacaccttcccgctgaccagcggcagcaagggcctgcacctg
tatgtgccactggacgagccgatcagttcgcagggtgcgtcggtgctggccaaacgggtc
gccctgcagttggagaaggccatgcccacgctggtcaccgcgacgatgaccaaaagcgtg
cgcaccggcaaggtgttcctggactggagtcagaacaacgccgccaagaccaccatcgcc
ccgtattcgctacgcggccgcgagcatccgaccgtcgccgcgccccgcacctgggacgag
atcgacgaccccgacctgcggcacctgaccttcaccgaggtgctggaccgggtcgaccgg
ctcggcgacctgctggccccgatggacgccgacgccccggtcgccgatcggctcagcagc
tatcgcagcatgcgggatccggccagaacacccgaacccgtcccgaaaaccgttgccgcg
acgggagacgacaaccgcttcgtgatccaggagcaccacgcgcgacggctgcactacgac
ctgcggctggaacgcgacggggtgctggtgagctgggcgatcccgaagaatctgcccgac
gacccgtcggtcaaccacctggccgtgcacaccgaggaccatccgctggaatatctgacc
ttccacggcgagatccccgaaggcgagtacggcggcggcaagatgctgatctgggacacc
ggcacctacgaggccgagaagttcaacgacgtcggcccggacgaggacgccgagggcggc
gaggtcatcatcaccctgcacggcgagaagatctccggacgttacgcgctcatccagacc
gacggcaagaactggttggcgcacaagatgaaggatcagaagccgcgcaccgagatacgg
cccgaggacttcacaccgatgctggccacccacggctcggtggcgcgcctctccgccgag
acgcatgccttcgaaggcaaatgggacggctaccggctgctggtccacatcgaccacggc
aagctgtgcctgcggtcgcgcagcggacgcgatgtcaccaaggagttcccgacgctgcag
gcgatggccgccgatctggccgaccaccaggtggtgctcgacggggaggtggtggcgctc
gacgggtccggggtgccgagcttcggtgagatgcagaaccgggcccgcgccacccacatc
gagttctgggcattcgacatcctgtggctggacggccgctccttgttgcgcgccaagcat
tccgaccgccgcagggtcctgctcgcgttggccgagaaggacggtctgatcgtgccggac
ctgttacccggcgacaccggagccgaggcgctggagtacgcgcgggaacgcggcttcgaa
ggcgtggtggccaagcggcacgactcgatctatcagccgggccggcgctcgaaagcgtgg
atcaaggacaagatctggaacatgcaggaggtggtgatcggcggctggcgcaagggcgag
ggcggccggtccagcggcatcggcgcgctggtgctgggcatccctaccgaaggaggactg
cagttcgtcggcagggtcggtaccggattcaccgacaagcaactggccgagctcaagcag
ttgctcgcaccgctggagaccgacgagagtccgttcgtcgacccgttgccgcgccccgac
gccaaaggggtgacgtacgtgcggccggagctggtcggcgaggtgcgctacagcgagcgc
accgccgacaaccggctgcgccaacccagttggcgcgggctgcgtccggacaagtcaccc
gatgaggtgaggtgggaatga
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