Medicago truncatula (barrel medic): 112420425
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Entry
112420425 CDS
T01716
Name
(RefSeq) THO complex subunit 1
KO
K12878
THO complex subunit 1
Organism
mtr
Medicago truncatula (barrel medic)
Pathway
mtr03013
Nucleocytoplasmic transport
mtr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mtr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
112420425
09122 Translation
03013 Nucleocytoplasmic transport
112420425
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mtr03019
]
112420425
03041 Spliceosome [BR:
mtr03041
]
112420425
Messenger RNA biogenesis [BR:
mtr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
112420425
Spliceosome [BR:
mtr03041
]
Complex C
Other components
EJC/TREX
112420425
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
112420425
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
efThoc1
Motif
Other DBs
NCBI-GeneID:
112420425
NCBI-ProteinID:
XP_024635469
LinkDB
All DBs
Position
3:complement(3840350..3853106)
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AA seq
606 aa
AA seq
DB search
MEVFKRAILQPGPPESFALQTVQEVIQPQRQTKLAQDENQSLENILRLLLQEFVSAAVQC
GEEVMQYGQSIDANETTQGHIPRLLDIVLYLCEKEHIEGGMIFQLLEDLTEMSTMKNCKD
IFGYIESKQDILGKQELFARGKLVMLRTCNQLLRRLSKANDVVFCGRILMFLAHFFPLSE
RSALNIKGVFNTSNETKYEKEPVEGICIDFNFYETFWGLQEYFSNPAPIIHSTFKWKKFT
SSLLVVLNTFEAQPLSDEEGDANNLEEEAVNFSIKYLTSSKLMGLELKDPSFRRHVLVQC
LILFNYLKAPGKGDKDLPSETMKDEITSCEERVKKLIELTPPKGKEFLHKIEHILEREKN
WVWWKRDGCPPYEKQATEKKAVPDGSKKRKPRWRLGNKELSQLWKWADQNPNALTDPQRV
QTPSILEYWKPLAEDMDPSAGIEAEYHHKNNRVYCWKGLRLSARQDLEGFSKFTEYGIEG
VVPLELLPSDVQSKYQAKPNDRSKRGKKEEAKKAANQVEENQTATPSIEIDGGEGIRADS
TATPMEFDAAALPGGTSTSDELQKNGSDTDIGQEAGQLEADAEVEDGIIDETDADADADA
DLDAVG
NT seq
1821 nt
NT seq
+upstream
nt +downstream
nt
atggaggtatttaaaagggccatattacaaccggggccacctgaaagttttgctttgcag
actgttcaagaagtaatacagcctcagagacaaacaaaattggcccaagatgagaaccaa
tccctagaaaacattctacggctattacttcaggaattcgtgtcggcagcagtacagtgt
ggggaggaagtaatgcaatacgggcaatcaattgatgctaatgaaactacccaaggccac
attcctcgtcttcttgatatagtgctatatctgtgtgagaaggaacacattgaaggtgga
atgatttttcagttgttggaagatttgacagaaatgtctacaatgaaaaactgcaaggat
atttttggctatatagagagtaaacaagatatattgggaaagcaagaactttttgctcga
ggaaaacttgtgatgctgagaacctgtaatcaactgcttcgccgtctttcaaaggcaaat
gatgtggtcttttgcggaagaattctcatgtttctggctcatttctttccattatcagag
cgatctgccttaaatatcaagggtgtctttaacacatcaaatgaaacaaaatatgagaaa
gaacctgtagaaggcatatgcattgatttcaatttttatgaaactttttggggcttacag
gagtatttttctaaccctgctcctataattcactctacatttaagtggaaaaagttcacc
tccagcttgttggttgtactgaatacatttgaagcacaacctttaagtgacgaagaggga
gatgctaataatttggaagaagaggcagttaactttagtataaaatatctcacaagcagt
aaacttatgggtctagagttgaaggatccaagttttcgacgtcatgttcttgtgcagtgt
ctgatattgtttaattatttgaaggcccctggaaaaggtgacaaggatctgccatctgaa
accatgaaagatgagatcacatcatgtgaagagcgtgttaaaaaacttattgaactgact
ccacccaaagggaaagagttccttcacaaaattgagcatatattagaacgagaaaagaat
tgggtgtggtggaaacgtgatggctgcccaccatatgaaaaacaagctacagagaagaaa
gcggtaccagatggctcgaagaaacgtaagccaagatggagattgggtaacaaagaactg
tctcagttgtggaagtgggcagatcaaaatccgaatgctttaactgatcctcagcgtgtt
caaacaccttcaattctggagtactggaaacccttggctgaagatatggatccttctgct
ggaatagaagctgaataccaccacaagaataaccgggtttattgttggaaaggtcttcgt
ctttcagcacggcaggacttggagggtttttctaagtttactgaatatggaattgaaggg
gttgtaccactagaacttttgccgtctgatgtccaatctaaataccaagctaaaccaaat
gacagaagtaaacgtggtaaaaaggaagaggcaaagaaagctgctaatcaagttgaagaa
aatcagactgctacaccttcaattgagatagatggtggtgaaggcattagagcagatagc
acagcaacacctatggaatttgacgctgctgctctccctggtggaacctcaacttctgat
gaacttcagaagaatggctcagatactgatatcggtcaggaagcaggtcaattggaagcg
gatgctgaagttgaagatggaatcatagatgagactgatgctgatgctgatgctgatgct
gatttagatgcagttggctaa
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