Medicago truncatula (barrel medic): 11417361
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Entry
11417361 CDS
T01716
Name
(RefSeq) uncharacterized protein LOC11417361 isoform X2
KO
K10643
CCR4-NOT transcription complex subunit 4 [EC:
2.3.2.27
]
Organism
mtr
Medicago truncatula (barrel medic)
Pathway
mtr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mtr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
11417361
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
mtr03000
]
11417361
03019 Messenger RNA biogenesis [BR:
mtr03019
]
11417361
04121 Ubiquitin system [BR:
mtr04121
]
11417361
Enzymes [BR:
mtr01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
11417361
Transcription factors [BR:
mtr03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
11417361
Messenger RNA biogenesis [BR:
mtr03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
11417361
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
11417361
Ubiquitin system [BR:
mtr04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
11417361
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_4
RRM_1
Baculo_IE-1
zf-RING_2
zf-UDP
Rtf2
Motif
Other DBs
NCBI-GeneID:
11417361
NCBI-ProteinID:
XP_003597140
UniProt:
G7IU41
LinkDB
All DBs
Position
2:complement(45760395..45769358)
Genome browser
AA seq
1007 aa
AA seq
DB search
MSDEGERTCPLCAEEMDLTDQQLRPCKCGYQICVWCWHHIMDMAEKDETEGRCPACRSPY
DKEKIVGMAANCERLVAEVHMERKMKSQKAKSKSSDGRKQLSNVRVIRRNLVYIVGLPLD
LADEDLLQRREYFGQYGKVLKVSMSRTAAGVVQQFPNNTCSVYITYSKEEEAIRCIQNVH
GFVLEDRPLRACFGTTKYCHAWLRNMPCSNPDCVYLHEIGSQEDSFTKDEVVSAYTRSHI
QQITGAVTNMERRSGNVLPPPLDDCTSNTSGKPTVKNSSSNSVGTARGLPPNGIPAKPMA
PHAAWGLRATNCQPAAGGPTGLSKPKPDSISSTLPFSSAVAGTVQVSLQSDTMKRPLSSD
GRHSIMPGAKNNCVDVLANVGEKTLASDVSSAPVNLNTQLSLARDSCRGCCTTSNTTKSI
DVTTNSIGSFSRSEAITATNEEIQNLSSEVSSIDLDRNAQNEHYNITKPSSPAPDDALVK
SMQSQGSEYNVDKYRDEIITNADSKASISDNKVCNSKEQYDLKLDSQSEVASGYVELEDD
VTSFDSQRLKDPEVVCNSYLPNSSFPRVASHNNPHPLSHGEPCNVVNAGSLATDNEVGFQ
PLLHGSKALCNGYSEKFDSTSSYRLLRDERNDHHIGRLISEAVNIGGDAATDKGESSIIS
NILSMEFDAWNDSVLSPHNLAKLLSESTENQNGTLKKSNSCVQTNQSRFSFARQEESKIQ
AFDVNPSHGANQQFLKSGSLIQDFVETDKIGIANGFPATNNFEESENISGQFAASFNKIS
AVPKTQISAPPGFSAPSRPPPPGFSSHERMGQAFDSTSGNSLLDPSFLWRNSYQTPSTGN
FGGAGDIEFMDPAILAVGKGRLQGSLNSPMLDMQSNYSPQLNYFENEARLQLLMQRSLSP
QQNHRFSEIGNTFSHLGDSYGISSRIDQSQVSNLASFPQLALQQSRNAVLSNGNWDGWNE
MQNGNSMGMAELLRNERLGFSKFHRGYDDSKYQMPNSGDLYNRTFGI
NT seq
3024 nt
NT seq
+upstream
nt +downstream
nt
atgagtgatgaaggagaaaggacttgtcctctttgtgctgaagagatggatttgacagat
cagcaattgagaccatgcaaatgcggctaccagatttgtgtctggtgttggcatcacata
atggacatggctgagaaggacgagacagagggacggtgccctgcatgtcgatctccatat
gataaggaaaagattgtcgggatggctgcaaactgtgagagattggtggctgaagttcat
atggaaagaaagatgaagagccagaaagcaaagtcgaaatcatctgatggacggaagcag
ctcagcaatgtgcgagttatcaggcggaatcttgtttacatagtgggattgcctctcgat
ctggctgatgaagatcttctccagcggcgggagtattttggtcaatatgggaaggtctta
aaagtttcaatgtctcgaacggcagctggtgttgttcagcagtttccgaacaatacatgt
agtgtatatattacttattcaaaggaagaagaagcaattcgatgtattcaaaatgtacat
gggtttgttttggaggatagacctttaagggcttgttttggaacaactaaatattgtcat
gcatggctcagaaacatgccttgcagcaatccggattgtgtatatcttcatgagattggc
tctcaagaagacagtttcacaaaagatgaagtagtttccgcatacactagaagtcatatt
caacaaattactggcgctgtaaccaatatggaacggcggtcggggaatgtattgcctcct
cctttggatgattgcacaagcaacacttcagggaaacccactgtaaaaaattcttcaagt
aactctgttggcactgcaagaggtttgcctcctaatggaattcctgcaaagcctatggct
ccccatgctgcatggggtttgcgggctacaaattgtcagccagctgctggcggtccaacc
ggactatccaagcccaagcctgattcaatcagcagcactctacctttctcctcggctgtt
gcaggcacagttcaagtttcattgcagagtgatacaatgaagaggcctttgtcaagtgat
gggcgtcatagtataatgcctggagccaaaaataattgtgtggatgtcctggcgaatgtg
ggcgaaaaaacactggcttctgatgtttcttctgctcccgtgaatttgaacacccagctg
tcattagccagagatagttgccgagggtgttgtacaacatcaaacacaacaaagtctatt
gacgtcacaacaaattcaattggcagctttagccgtagtgaagcaattactgctaccaat
gaagagattcaaaatttgtccagcgaggtgtcttctattgaccttgatagaaatgcccaa
aatgaacattacaacataaccaaacctagcagcccagctcctgatgatgcattggttaag
tctatgcaatctcaaggatcagaatataatgttgacaaatatagagacgaaataattaca
aatgcagacagtaaagcctctatatcagataataaggtctgtaattcaaaggaacaatat
gatttgaaattggattctcaatctgaggtagcatcaggttatgttgaactagaggatgat
gtgacatcttttgatagtcagagacttaaggatccagaagttgtttgtaattcttacttg
cccaactcatctttccctcgcgtcgcaagtcataataatcctcatcctctgtcgcatggt
gaaccttgtaatgttgtaaatgctggttctttagccacagataatgaagttgggtttcaa
ccactgttacatggatctaaagcattatgcaatggctattctgagaaattcgacagcacc
agctcttacaggttgcttcgtgatgaaaggaatgatcatcacattggaagattaattagt
gaagcagttaatattggaggtgatgctgctacagataagggagagagtagtataatttca
aatatattgtccatggaatttgatgcctggaatgactcggtattatcaccccataatttg
gccaagttgttaagtgaaagcactgaaaatcagaatggtacgctaaagaaatctaattct
tgtgttcaaaccaatcaatcgagattttcttttgcaagacaagaggaatccaaaatccaa
gcttttgatgtgaatccatctcatggtgccaaccaacaatttctaaaaagcggttcactt
atccaagatttcgtagaaacggacaagattggtattgcaaatggctttcctgctactaat
aactttgaggaatctgaaaatataagtggtcaatttgctgcttctttcaataagatttct
gctgttccaaaaacacaaatttcagcgcccccaggattttcagctccaagcaggccacca
cctcctggtttttcttctcatgagagaatggggcaggcttttgactcaacttcggggaat
tcattgcttgacccttctttcttatggagaaattcatatcagacaccatcaactgggaat
tttggtggtgctggagacattgagtttatggatcctgctattttggctgttggtaagggg
aggcttcaaggttcactaaacagcccaatgctagacatgcaatccaattactccccacag
ttaaattactttgagaatgaggccagacttcagttattaatgcaaagatctctctcacca
caacaaaaccatcgattttcggaaattgggaacaccttttctcatcttggtgattcttat
ggcatttcttcacgaatagatcaatctcaagtcagtaatttggcatcatttcctcaattg
gctctccagcagtctagaaatgcggtcttgtcaaatggcaattgggatgggtggaatgag
atgcagaatggaaatagtatgggtatggctgagcttttaagaaatgaaagacttgggttt
agtaagtttcatagaggatatgatgattcaaaataccagatgccaaattctggggatcta
tacaacaggacatttgggatttga
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