Medicago truncatula (barrel medic): 11417626
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Entry
11417626 CDS
T01716
Name
(RefSeq) general transcription factor IIH subunit 2
KO
K03142
transcription initiation factor TFIIH subunit 2
Organism
mtr
Medicago truncatula (barrel medic)
Pathway
mtr03022
Basal transcription factors
mtr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mtr00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
11417626
09124 Replication and repair
03420 Nucleotide excision repair
11417626
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mtr03021
]
11417626
03400 DNA repair and recombination proteins [BR:
mtr03400
]
11417626
Transcription machinery [BR:
mtr03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
11417626
DNA repair and recombination proteins [BR:
mtr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
11417626
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ssl1
C1_4
VWA_2
VWA
IBR
zf-AN1
VWA_3
zf-RING_4
Motif
Other DBs
NCBI-GeneID:
11417626
NCBI-ProteinID:
XP_003624959
UniProt:
G7L5Y2
LinkDB
All DBs
Position
7:complement(41894807..41899928)
Genome browser
AA seq
426 aa
AA seq
DB search
MNNIAGKPLNGDLEDDDEDEANDDGLEAWERAYTEDRSWESLQEDESGLLRPIDTTAIHH
AQYRRRLRALASNAATARIQKGLIRYLYIVVDLSKAASERDFRPSRMAVIAKQVELFIRE
FFDQNPLSHVGLVTTKDGVANCLTDLGGSPESHIKALMGKLECSGDASLQNALELVHSNL
NQIPSYGHREVLILYSALSTCDPGDLMETIQKCKKSKIRCSVIGLAAEMFICKHLCQETG
GTYSVALDESHFKELILEHSPPPPAIAEYATANLIKMGFPQRAAEGSVAICTCHEEAKTG
GGYTCPRCKVRVCELPTECRVCGLTLISSPHLARSYHHLFPIVPFAEISPSSQNDPNHSF
PNTCFGCQQSLLSQGFGAGNKAELSVSCPKCKQQFCLDCDMYIHESLHNCPGCESFRHSK
SVTIAQ
NT seq
1281 nt
NT seq
+upstream
nt +downstream
nt
atgaataacattgctgggaaaccgcttaatggagatttagaggatgatgatgaagatgaa
gctaatgatgatggccttgaagcgtgggagagagcttatacagaagatagatcatgggag
tctttgcaggaagatgaatctggacttcttcgtcccatagatacgacagccattcatcat
gcccagtatcgtagacgcctccgcgcccttgcttcaaatgcagctactgcgcgaattcaa
aagggtttgatacgatacttatacattgttgtggacctgtccaaggcagcttcagagagg
gactttcgaccaagtagaatggctgtgattgcaaagcaggttgagttatttatcagggag
ttctttgatcagaatccacttagtcatgttggtttggtgactaccaaagatggtgttgct
aattgcttgacagatcttggcggcagtcctgagtcacacatcaaagctttgatgggtaaa
ctagaatgctcaggtgatgcctccctacaaaatgcactagaacttgttcatagcaatcta
aatcaaatcccatcatatggtcatcgagaagttctgattttatattcggccctcagtaca
tgtgatcctggtgatctcatggaaactatccaaaaatgcaaaaagagtaaaataagatgc
tcggtcattggtcttgctgctgaaatgtttatatgcaagcatctttgccaagaaactgga
ggaacgtattcagttgcactagatgagtcccactttaaagagttaattcttgagcattct
ccaccacctccagcaatagcagagtatgctacggctaatttgattaagatgggtttcccg
caaagagcagctgagggttccgttgcaatttgtacatgtcatgaagaggccaaaactgga
gggggatacacttgtccaagatgcaaagttcgtgtctgtgagcttcctactgaatgccgc
gtctgtggattgacccttatttcttcgccccatttggcaaggtcatatcatcatctcttc
cctatagtgccatttgctgagatctctccatcatctcaaaatgatccaaaccatagtttt
cccaatacttgttttggttgtcaacaaagtctccttagtcagggttttggagcaggaaac
aaggctgaactttccgtctcttgcccaaaatgcaaacaacaattctgccttgattgtgac
atgtacattcatgagagtttacataattgcccaggctgtgagagcttcaggcattctaag
tcagttactattgcccaatga
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