Medicago truncatula (barrel medic): 11442176
Help
Entry
11442176 CDS
T01716
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH10
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
mtr
Medicago truncatula (barrel medic)
Pathway
mtr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mtr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
11442176
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mtr03019
]
11442176
03041 Spliceosome [BR:
mtr03041
]
11442176
03009 Ribosome biogenesis [BR:
mtr03009
]
11442176
03016 Transfer RNA biogenesis [BR:
mtr03016
]
11442176
Enzymes [BR:
mtr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
11442176
Messenger RNA biogenesis [BR:
mtr03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
11442176
Spliceosome [BR:
mtr03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
11442176
Complex C
U4/U6.U5 tri-SnRNP related factors
11442176
Ribosome biogenesis [BR:
mtr03009
]
Eukaryotic type
Pre-60S particles
Helicases
11442176
Transfer RNA biogenesis [BR:
mtr03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
11442176
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
nSTAND3
Motif
Other DBs
NCBI-GeneID:
11442176
NCBI-ProteinID:
XP_003630609
UniProt:
G7LIV7
LinkDB
All DBs
Position
8:complement(46677106..46686460)
Genome browser
AA seq
984 aa
AA seq
DB search
MEQEPAMEQESTTLGKRSEPEPVSTADGGDTSSQPKKCRSSECTCVHEVAVPINYTSTKD
ESLHGTLSNPLHNGTMAKTYPFTLDPFQQVSIACLERNESVLVSAHTSAGKTAIAEYAIA
MSFRDKQRVIYTSPLKALSNQKYRELSQEFTDVGLMTGDVTLSPNATCLVMTTEILRGML
YRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSATMSNATEFAEWI
CNIHKQPCHVVYTDFRPTPLQHYVFPIGGSGLYLVVDENEQFREDNFLKVEDTFVKQKLG
EGKGGKTNGRFGKGGSASGGSDIYKIVKMIMERKFQPVIIFSFSRRECEQHAMSMSKLDF
NSQEEKDTVEHVFQNAMLCLNEEDRSLPAIELMLPLLQRGIAVHHSGLLPVIKELVELLF
QEGLVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDE
RGICIIMIDEQMEMNNLKDMVLGKPAPLVSTFRLSYYSILNLMSRAEGQFTAEHVIRNSF
HQFQYEKTLPDVGKRVSMLEQEVALLDAAGEAEVSEYHKLKLDLAQLEKKMMSQIIRPEM
ILYFLVPGRLIKVREGGTDWGWGVVVNVVKKPVGGYIVDTLLHCSPGSNENSIRPKPCPP
RPGEKGEMHVVPVQLPLISALSKLRIYVPPDLRPLEARQSILLAVQELGNRFPQGLPKLN
PVKDMDVRDSEIVELVNQIEELEKKLFDHPMHKIQDVDQIKCFERKAEVNHEIQQLKAKM
RDSQLQKFREELKNRSRVLKKLGHIDSDSVVQLKGRAACLIDTGDELLVTELMFNGTFND
LDHHQVAALASCFIPIEKSSEQIQLRSELARPLQQLQDSARRIAEIEHECKLEVNVNEYV
ESTVRPFLMDVIYSWSKGSSFADVTQMTDIFEGSIIRAARRLDEFLNQLRAAADAVGEAD
LEKKFAAASESLRRGIIFANSLYL
NT seq
2955 nt
NT seq
+upstream
nt +downstream
nt
atggagcaagaaccagcaatggagcaggaatcaacaacactcggaaaacgaagtgaaccg
gaaccggtttccaccgccgacggcggcgacacttcttcacaaccaaaaaaatgccgcagt
tcagaatgcacctgcgttcacgaagtagcagttccaatcaattacacctcaacgaaagac
gaatcacttcacggaacactatccaaccccctccacaacggtaccatggctaaaacctat
cctttcacacttgatccatttcaacaagtatcaattgcatgtctcgaacgaaacgaatct
gttttagtctccgcgcatacttccgccggaaaaaccgcaattgcagaatacgcaattgca
atgtcctttagagataagcagagagtaatttatacctcaccattgaaagctctaagtaat
cagaaatatagagaattgagtcaggaatttacagatgtagggttgatgactggtgatgtc
acgctttctccgaatgccacgtgtcttgttatgactacggagattcttcggggaatgttg
tatcgtggttctgaagttttgaaggaagttgcttgggtcatatttgatgaaattcattat
atgaaggatcgtgaaaggggtgttgtatgggaagaaagcattatatttttaccacctgct
attaagatggtttttctttcggccactatgtccaatgccacagagtttgcggagtggatt
tgtaatatacataaacaaccctgtcacgtagtttacactgattttagaccgacaccattg
cagcattatgtttttcctattggtgggagtggattgtatttggttgttgatgagaatgaa
cagtttagagaagataattttcttaaggtggaggatacttttgttaagcagaaacttggt
gaagggaagggtggtaaaacgaatggaagatttggaaaaggtggttctgcttctggtggg
tctgatatatacaagattgttaagatgatcatggaaaggaaattccaacctgttatcatc
tttagcttcagtaggagagagtgtgagcagcatgcaatgtctatgtctaaacttgacttc
aattcccaagaggaaaaggatacagtggaacacgtttttcagaatgcaatgctctgcttg
aatgaagaagaccgaagcttacctgctatcgagttgatgttgccacttcttcagcgagga
attgctgttcatcattctggccttcttcctgtcatcaaagaattggttgagcttcttttt
caggaaggtcttgtaaaggccctctttgctactgagacatttgcaatgggtttaaatatg
ccggcaaaaactgtcgtattcactgctgttaagaagtgggatggtgatagtcaccgttat
attggatctggtgaatacatacagatgagtggaagggctgggcgtcgtggcaaagatgag
cgtgggatctgtatcataatgattgatgagcagatggaaatgaataacctcaaagacatg
gttctgggtaaacctgctcctttagttagtacattcaggcttagctactactcaatttta
aatttgatgagccgagcagaaggccagttcactgcggaacatgtgataagaaattcattt
catcaatttcaatatgaaaagaccttacctgatgtgggaaaaagggtgtctatgctggag
caggaagtagccttgcttgatgctgcaggggaggctgaagtatcggaatatcataagctg
aaattggacttagctcagcttgagaagaagatgatgtcacaaataattagacctgaaatg
attctttattttcttgtccctggtcgactgattaaagtaagagaaggtgggacagattgg
ggctggggtgttgtagtcaatgttgttaagaaacctgttggtggttatatagttgacact
ttacttcattgttcacctggttcaaacgaaaacagtatacgaccaaaaccatgtccaccc
cgccctggagagaaaggtgaaatgcatgtggtccctgttcaattaccattaatctctgcc
cttagtaaactaaggatatatgtacctcctgatctccggcccttggaagctcggcaaagc
atactccttgctgttcaggagctgggcaatcgttttcctcaaggtcttccaaagcttaac
cctgtaaaggacatggatgttcgagattcagagatagttgaacttgtcaatcaaatagag
gaacttgagaaaaagttgtttgatcatcctatgcataagattcaagatgtggatcaaatt
aagtgctttgagaggaaagctgaagtgaatcatgaaattcaacaactgaaggcaaaaatg
cgggactcccagctgcaaaaatttcgggaagaacttaaaaatcgctcgcgagtcttaaag
aagcttggtcatattgattctgatagtgtagttcaattgaaaggaagggcagcctgcttg
attgacacaggcgatgaactccttgtcaccgaattaatgtttaatggcacttttaatgat
cttgaccatcatcaagttgctgcccttgcaagttgttttataccaatagagaaatcgtct
gagcagatacaactgagatcagagcttgcgagacctctacaacagcttcaagacagtgca
agaaggatagcagagatagagcacgaatgcaaattggaggtaaatgtgaatgagtatgtc
gaatcaacagtaaggccattcttgatggatgtaatatactcttggtcaaagggatcaagt
tttgctgatgttactcaaatgactgacatcttcgaggggagtatcattagggcagctaga
aggcttgatgagtttttgaatcagttgcgtgctgctgctgatgcagttggagaagctgac
ttggagaagaaatttgcagcagcgagtgaaagccttcgacggggtattatttttgcaaat
tctctgtatctgtga
DBGET
integrated database retrieval system
