Medicago truncatula (barrel medic): 11442894
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Entry
11442894 CDS
T01716
Name
(RefSeq) putative DEAD-box ATP-dependent RNA helicase 29 isoform X2
KO
K14808
ATP-dependent RNA helicase DDX54/DBP10 [EC:
5.6.2.7
]
Organism
mtr
Medicago truncatula (barrel medic)
Brite
KEGG Orthology (KO) [BR:
mtr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
mtr03009
]
11442894
Enzymes [BR:
mtr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
11442894
Ribosome biogenesis [BR:
mtr03009
]
Eukaryotic type
Pre-60S particles
Helicases
11442894
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DBP10CT
ResIII
P-loop_SecA
Motif
Other DBs
NCBI-GeneID:
11442894
NCBI-ProteinID:
XP_003607536
UniProt:
G7JUZ3
LinkDB
All DBs
Position
4:38587009..38596617
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AA seq
787 aa
AA seq
DB search
MGGFPVGSKKKKNNKNQHGFETLGLNRDVFSGIKRKGYKVPTPIQRKTMPLILSGIDVVA
MARTGSGKTAAFLVPMLHRLNQHVPQGGVRGLILSPTRDLAQQTLKFTKELGHFTDLRVS
LLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVDDMSLRKVEYVVFDEADCLFGMGF
AEQLHQILAQLGENRQTLLFSATLPSALAEFAKAGLRDPRLVRLDLETKISPDLKLVFFT
LRQEEKYAALLYLIRELIGSDEQTLIFVSTKHHVEFLNSLFQLEGIRPSVCYGDMDQDAR
KEHVARFRSRKTMLLIVTDIAARGIDIPLLDNVINWDFPPKPKIFVHRVGRVARAGRTGT
AYSFLTAEDMAYLLDLHLFLSKPVKAAPTEEEVLRDMDGVMSRIDDEMLNGETIYGRFPQ
KVIDLVSDRVREVIDTSAELEALQRACKNAFRLYSKTKPLPSKESIRRVKDLPHEGLHPI
FNKVLGTGELTAIAFSEHLKNFRPKQTILEAEGEAAKAKRRAGPSGHWVDVMKRKRAVHD
SIIVNEQHSKSNEHQSKSNSEKEENQPEITSSMDKGRKARGSKRKPNPESFKDEEYFISS
IPQNQHMEAGLAVKANEGFSSNRLDDAVLDLGADDGAGIKKQKSVYHWDKRSKKYIKLNN
GDRVAANGKIKTESGAKTKANKTGIYKKWKERSHSKISLKGTSADGDAQESRSSRGSYQG
GGRNYKGGKKQHLMPNAHVRSEIKDMDQIRKERQKKASKISYMKSKSPKGKKSGKPGRKG
GNKRKSK
NT seq
2364 nt
NT seq
+upstream
nt +downstream
nt
atgggaggttttccggtaggttcaaagaagaagaaaaacaacaaaaatcaacacggtttc
gaaaccctaggtctaaaccgcgatgtattcagtggaatcaaacgcaaaggctacaaagtt
cctactccaattcagcgaaaaacgatgcctctcattctctccggtatcgacgtcgttgct
atggctcgtactggttccggtaaaacggcggcgtttcttgttccgatgcttcaccgactt
aatcagcatgttcctcagggtggcgttagaggacttattttgtcaccgactagagattta
gcgcaacagacattgaagttcaccaaagagcttggtcacttcacagaccttcgtgtcagt
ttgttagttggcggtgatagtatggaaagtcagtttgaggagttagctcagaatccagat
attataattgccactcccggtaggctcatgcaccatttgtctgaggttgatgacatgtcc
ttgcgtaaggtggagtatgttgtttttgacgaggcggattgtttatttggtatgggtttt
gctgagcagctccatcaaattcttgcccagcttggtgagaaccgtcaaaccttgcttttc
agtgccacattacccagcgctcttgcagaatttgctaaggccggtctgcgagaccctcgt
cttgttcgcctcgatttggaaactaaaatcagccctgacttgaagcttgtctttttcact
ttgaggcaggaagagaaatacgctgctttgctctatttaattagggaacttatcggttct
gatgagcagactttaatttttgtatccactaaacaccatgttgagtttctcaactcgttg
tttcaactagagggtattaggccttctgtatgttatggagacatggatcaagacgctcgt
aaagaacatgtggccaggtttaggtcaagaaagacaatgttgttgattgtcaccgacatt
gctgctcggggcattgacattccattgcttgataatgttatcaattgggactttcctcct
aagcctaaaatatttgttcatcgagttggacgggttgcaagggctggtcgtactggtacc
gcatattctttcttgactgccgaggatatggcttatctcttggatcttcatttgtttctc
tcaaaaccagtcaaagctgctccaactgaggaagaagtcttgcgggatatggatggagtg
atgtcaagaattgacgacgaaatgttaaatggagaaaccatttatggtcgtttccctcaa
aaagtcattgaccttgtttctgacagagttagggaagttattgatacttctgcggagctg
gaagcattgcagagagcctgtaaaaatgcatttcgtttatactctaaaacaaaaccctta
ccctcaaaggagtccatcagaagagtaaaggatttgccacatgaaggtctgcatccgatt
ttcaacaaagtgttgggaacaggggagttaacggcaattgcgttttctgagcatttgaaa
aattttaggccaaagcagaccattttggaagcggaaggagaagcagctaaagctaagcgt
agagcaggcccttctggtcattgggttgatgtgatgaaaaggaaaagagccgttcatgat
agtattatagttaatgaacagcattcgaagagtaatgaacaccaatcgaagagtaatagt
gaaaaggaggaaaatcaaccggaaattacttcttccatggataaagggagaaaagcacgt
ggctctaagcgaaagccaaatccagaaagtttcaaggacgaggaatactttataagttcc
atacctcaaaatcaacacatggaggcaggccttgcggtaaaagctaatgaaggcttttct
tcaaacagattggatgatgctgtcctagatctaggtgcagatgatggtgctggcattaag
aaacaaaaatctgtgtatcactgggataagaggagtaaaaagtacatcaagttaaacaac
ggtgaccgtgttgctgcaaatggaaagataaagacagagagtggtgcaaaaacaaaggcc
aacaagactggtatatataaaaagtggaaggaacgctcacactccaagatatctcttaaa
gggacaagtgccgatggtgatgctcaggaatcaagaagttcaagaggatcttaccaagga
ggtggtaggaattacaaaggcggcaagaagcagcatttaatgcccaatgctcatgtccgt
tcagaaatcaaagatatggatcaaattcgaaaggagaggcagaagaaagccagcaaaatt
tcttatatgaagagcaagtcgccaaagggtaaaaaatcgggcaaacctggcagaaaggga
ggaaataaaagaaaatccaagtag
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