Medicago truncatula (barrel medic): 25489050
Help
Entry
25489050 CDS
T01716
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
mtr
Medicago truncatula (barrel medic)
Pathway
mtr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mtr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
25489050
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
mtr03041
]
25489050
Enzymes [BR:
mtr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
25489050
Spliceosome [BR:
mtr03041
]
Complex C
Other components
Step II factors
25489050
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
HA2_N
AAA_22
SLFN-g3_helicase
AAA_19
AAA_24
Flavi_DEAD
AAA_30
nSTAND3
T2SSE
Microtub_bd
ATPase
PhoH
AAA_16
DUF3381
AAA_7
ABC_tran
Motif
Other DBs
NCBI-GeneID:
25489050
NCBI-ProteinID:
XP_013459906
UniProt:
A0A072UWH4
LinkDB
All DBs
Position
3:complement(24810927..24814137)
Genome browser
AA seq
1065 aa
AA seq
DB search
MESGQADTRRHESYSGRDSHGRYYDHEYDRKRNRYEGSRRKPNRYDLHNRRWEWEDAPQR
EETPWHTPCSSFNSLSPLDHVSPSPFPIRASGSSHKSSVAGYNRRLHKLAFSSDEEEIAN
KSDLGEEHKYEITESMRQEMEYSADRAWYDREEGSTLFDFDNSSLFVGDEASFQKKEAKL
AKRLVRRDGTKMSLSQSKKLSQLTDNARWEDRQLLRSGAVRGIEVKTEFDDEDEGKVVLV
VHDTKPHFLDGRIVFTKQAEPVMPIKDPTSDMAIISRKGSAMVREIHGKQSSNKCRQRFW
ELAGSKLGDILGVEKTAENIDADTCIVGEDGEIDFKEEAKFSNHMKKEEAVSDFAVSKTL
TEQRQYLPIFSVREELLQVIRENQVVVVVGETGSGKTTQLTQYLYEDGYTIGGIVGCTQP
RRVAAMSVAKRVSEEMDTELGDKVGYAIRFEDVTGPNTIIKYMTDGVLLRETLKDSDLDK
YRVIVMDEAHERSLSTDVLFGILKKVVTQRRDFKLIVTSATLNAQKFSHFFGNVPIFHIP
GRTFPINILWSKIPVEDYVKGAVKQAMTIHMTSPPGDILIFMTGQDEIEAACYSLAEKME
QMVSSSNKEVPKLLILPVYSQLPADLQAKIFQKAEDGARKCIVATNIAETSLTVDGIFYV
IDTGYGKMKVYNPRMGMDALQVFPVSQAAANQRAGRAGRTGPGTCYRLYTESAYLNEMLA
SPVPEIQRTNLGNVVLLLKSLKVENLLDFDFIDPPPQDNILNSMYQLWMLGALNNAGRLT
ELGWKMVEFPLDPPLAKMLLMGEQFGCLEEVLTIVSMLSVPSVFFRPKDRAAESDAARER
FFVPESDHLTLYNVYQQWKQHDYRGDWCNDHFLHVKGLRKAREVRSQLLDILKTLKIPLT
TCFPDTDVVRKAICSAYFHNSARLMGVGEYVNTRNGMPCYLHPSSALYGMGCTPEYVVYH
ELILTTKEYMQCATAVEPKWMAELGPMFFSVTESDTSLMEHKKKQKREKTAIEEEVENLK
KEQAKFERENKRKEIEKRAKNQQQISIPGLKKCSSTFLRPKKFGL
NT seq
3198 nt
NT seq
+upstream
nt +downstream
nt
atggaaagtgggcaggcagatacacgcaggcatgagtcttactcaggaagggattcacat
ggtaggtattatgatcatgaatatgatagaaagcgaaacagatatgaaggttcaaggaga
aagcctaacagatatgacttgcacaatcgccgatgggaatgggaagatgctcctcaaagg
gaagaaactccatggcatactccttgttcgtcctttaattcactttctcctttggatcat
gtttctccgtctccttttccaatacgggcttctggctcttcacacaaatcttctgttgct
ggatataatcgaagattgcataaactcgctttttcttcagatgaggaggaaatagcaaat
aaatctgacttgggtgaagaacataagtatgagattactgaaagcatgcgtcaagagatg
gaatacagtgcagaccgagcatggtatgatagagaggaaggaagtacattgtttgatttt
gataactcttcactttttgttggagatgaggcttcgtttcagaaaaaagaggccaagttg
gccaaaagattggtccgaagagatggcactaagatgtccctttctcaaagcaagaaatta
tctcagcttactgataatgctcgatgggaagatcggcagctgctgagatcaggtgctgtt
agaggcatagaggttaagactgaatttgatgatgaggatgaaggcaaggtcgttcttgtt
gtgcatgatacaaagcctcattttcttgatggcagaattgtttttaccaagcaggcagag
ccagttatgccgataaaagatccaacatctgacatggctataatttctcgcaaaggatct
gcgatggtaagagaaatccatgggaagcagagttcaaacaagtgtcgccaacgcttttgg
gaacttgcaggctcaaaacttggtgatatattaggcgttgaaaaaacagcagaaaatatt
gatgcagacacttgtatcgtgggtgaagatggtgaaattgattttaaggaggaagctaag
ttttcaaaccacatgaagaaggaagaagctgtgagtgactttgctgtgtcaaaaactctt
accgagcaaaggcaatatctgcctattttttcagtgcgggaagagctattacaggtgatt
cgtgaaaatcaggttgtggttgtagttggggaaactggttcaggaaagacaacccaattg
acacaatatctatatgaagatggctacactataggcggtatagtaggttgcacccaacca
aggcgtgtggcagcgatgagtgttgccaagagagttagcgaggagatggacacggagttg
ggagataaagttggctatgcaatccgtttcgaagatgtgactggaccgaataccataata
aagtacatgacggatggggtacttctacgtgaaacacttaaagactctgatttagacaaa
tatagggttattgtgatggacgaagcccatgaaaggtcattaagcacagatgtccttttt
ggaatattgaagaaagttgtaacccaacgccgagatttcaaactgattgtcacatcagca
actttgaatgcacagaaattttcacatttttttggaaatgttccaatttttcatattccc
gggagaacatttcctatcaatatattatggagtaaaattccggttgaagattatgttaaa
ggtgcagtgaagcaggctatgactattcacatgaccagccctccaggtgacatccttatc
ttcatgactggccaagacgagattgaggcagcttgctactcccttgctgaaaaaatggag
cagatggtatcatcttcaaataaagaagtcccgaaacttttgattcttcccgtatattct
cagcttccagctgacttgcaagcaaagatatttcagaaagctgaagatggtgcgcgcaaa
tgcattgtggccactaatattgctgagacatcactaaccgtggatggtatcttctatgtt
atagacacgggctatggtaaaatgaaggtgtacaaccctaggatgggtatggacgctcta
caagtcttcccggttagccaggctgctgctaaccagcgtgctggtcgagctggtcgaact
ggccctgggacatgctatcggttgtatacagagagtgcttacctaaatgaaatgttggcc
agtcctgttccagagattcagagaactaaccttggcaatgtcgtcttgttgctgaaatct
cttaaagttgaaaatttactcgactttgatttcattgatccacctccgcaggataatatt
cttaattctatgtaccagttgtggatgttgggtgcccttaacaatgcggggagattgact
gaacttggctggaaaatggttgagtttccactggatcctccacttgccaagatgcttttg
atgggtgagcagttcgggtgtcttgaggaggttctgaccatagtttccatgctttcagta
ccatctgttttctttaggccaaaggaccgagcagcggagagtgatgctgcacgcgaaaga
ttttttgtgccagaatctgatcatttaacgctttacaatgtctatcagcaatggaaacaa
catgattacagaggtgattggtgcaatgaccattttttgcatgttaaaggtctaagaaag
gctagagaggtgagatcccagctgcttgatattctcaagactctaaaaattccgctgaca
acgtgctttcctgatacagacgttgttagaaaagcaatttgttctgcatacttccacaat
tcagcaagactaatgggtgtgggggagtatgttaacacgcggaatggaatgccatgttat
cttcaccccagtagtgctctctatggcatgggttgtactcccgaatatgtggtttatcac
gagttaatcctaaccaccaaggagtacatgcaatgtgccacagccgtagagcccaagtgg
atggctgagctcggacccatgtttttctccgtgacggagtctgatacatcactaatggag
cataaaaagaaacagaaacgagagaaaacggccattgaggaggaagtggagaatttaaag
aaggagcaagcgaagttcgagagagaaaataaacggaaggagatagaaaaaagggccaag
aatcagcagcagatttccatcccaggtttaaaaaagtgttcttccacattcttgagacca
aagaagtttggtttgtaa
DBGET
integrated database retrieval system
