Medicago truncatula (barrel medic): 25493180
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Entry
25493180 CDS
T01716
Name
(RefSeq) general transcription and DNA repair factor IIH subunit TFB2
KO
K03144
transcription initiation factor TFIIH subunit 4
Organism
mtr
Medicago truncatula (barrel medic)
Pathway
mtr03022
Basal transcription factors
mtr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mtr00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
25493180
09124 Replication and repair
03420 Nucleotide excision repair
25493180
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mtr03021
]
25493180
03400 DNA repair and recombination proteins [BR:
mtr03400
]
25493180
Transcription machinery [BR:
mtr03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
25493180
DNA repair and recombination proteins [BR:
mtr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
25493180
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tfb2
Tfb2_C
Helicase_C_3
MetRS-N
Motif
Other DBs
NCBI-GeneID:
25493180
NCBI-ProteinID:
XP_013457056
UniProt:
G7ZZ96
LinkDB
All DBs
Position
4:complement(43470519..43477124)
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AA seq
451 aa
AA seq
DB search
MPEVRIIAKNFMDMVASMPTIKLDKLYENGFICEAILRSLPPLAKKYVLQLFHIDGPVPA
KLLAEWVLPDGLSKHKVAIDRLVQLGVFVEALDSKNGKTYKVNPTYQRSLQKLLVHGGTL
PRESMPSNITVRLPTLEDLETYALEQWECFLLQLISPSHVDKTLNISSSLMKVFQRRLLS
QRDREAPKLTESGFQFLLMDTNAQLWYIIREYITNSEERGVDAGDLISFMLELSFHVIGE
AYNINTLTEFQRNIIKDLADLGLVKLQQGRKESWFIPTKLATNLSVSMTESSSRKEGFVV
VETNFRVYAYSTSKLHCEILRLFSRVEYQLPNLIVGAITKESLYNAFDNGITADQIVSFF
RQNAHPRVAQRIPAVPENVTDQIRLWESDLNRVEMTEAYYYDEFPSRDVFEGACDCAREW
SGLLWEDSKKMHLVVKSEVHTYVRDFLRRQK
NT seq
1356 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaggttaggatcattgccaagaatttcatggacatggtggcttcaatgcctacc
atcaaacttgataaactctacgagaatggattcatctgcgaagctattctcaggtctctt
ccacctcttgcaaagaaatatgtgttacagttatttcatattgatggacctgtgcctgct
aaattattggcggaatgggtgcttccagatggactatcaaagcacaaagttgccattgat
agattggttcaattgggagtttttgttgaagctcttgacagtaagaacggaaaaacttac
aaagttaatccaacatatcagagaagtctccagaaacttttagtacatggtggaactttg
ccgagggaatcaatgccttctaatattactgtgaggctcccaaccttagaggatcttgag
acttatgctctggaacaatgggagtgtttcttgttgcaacttataagcccaagtcatgtt
gacaagaccttaaacataagctcttctttgatgaaagttttccagcggcgtctcctgagt
cagagagacagagaagctcccaaattaactgaaagtggtttccagtttttgctgatggat
acaaatgcacagctttggtacatcatcagagaatatatcactaattctgaggagagaggt
gttgatgctggtgacttgatatcattcatgctggagcttagttttcatgtcattggggag
gcatataatataaacacattgacagaatttcagaggaacataattaaggaccttgcagac
cttgggcttgtcaaacttcaacagggcaggaaagaaagttggtttataccaacaaaatta
gcaacaaatctttcagtgagcatgaccgaatcatcatcaagaaaggagggatttgttgtc
gtggaaacaaattttagagtttatgcttactcaacttcaaaattacactgtgagatattg
cggttattttcaagggtagagtatcagcttccaaatcttattgttggagctattacaaaa
gaaagcttgtataatgcttttgacaatggcattacagcagaccagatagtcagtttcttt
cggcagaatgctcatcctcgtgttgcacagaggataccagcagtgcctgaaaatgtcaca
gatcagattaggttgtgggaatcagatctaaacagagttgagatgacagaagcatattat
tacgatgagttcccatccagggatgtatttgaaggcgcttgtgactgcgccagagaatgg
agtggtttattatgggaagattcaaagaagatgcatttggtggtcaagtctgaggttcat
acttacgtacgagattttttacgccgccaaaagtag
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