Medicago truncatula (barrel medic): 25495279
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Entry
25495279 CDS
T01716
Name
(RefSeq) polyadenylation and cleavage factor homolog 4
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
mtr
Medicago truncatula (barrel medic)
Pathway
mtr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
mtr00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
25495279
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mtr03021
]
25495279
03019 Messenger RNA biogenesis [BR:
mtr03019
]
25495279
Transcription machinery [BR:
mtr03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
25495279
Messenger RNA biogenesis [BR:
mtr03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
25495279
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
zf_UBZ
VHS
zf-C2H2_4
Motif
Other DBs
NCBI-GeneID:
25495279
NCBI-ProteinID:
XP_013450939
UniProt:
A0A072U797
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All DBs
Position
6:3175152..3181479
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AA seq
840 aa
AA seq
DB search
MSNEIVQKPPPSILVGRFKALLNQRREEDPRLRNSQPSTEEIVQIYELLLSELTCNVKPI
ITDLTIIAEQHRNHAKGIAFAICNRIVEVSADQKLPSLYLLDSIVKNVGQEYVRYFSQRL
PEVFCVAYRQVDPSLHSAMRHLFGTWSKVFPPSVLRKIDVELQFSKPVNNQPSGVNSLRA
SESPRPTHGIHVNPRYVRQIEHSTSVIDSVAGERLDSTGTAGNANFGLLASKINQFVPSR
VGRSSSPPRIGLDRHMPSYMDEYLADNSTGRTVERESPHHAVDYGLVKGLGREEESSEWS
RKPFSGDSRKRFQTSMTYSLSNGQPRQNPRALIDAYGSDKSQETSGSKPLLVERLDRNGM
DKVMTTSWQNTEEEEFDWEDMSPTVVDHGRSNGFLQPTIGFSSEKPVTVAANATSSVSRV
FPGLNSNIEYRPPVLPAAFETRHSVNVHAPRPPSITPIFPSKNPVRNPFESINANSTIVS
HGLINRPFPMHEQSLHGVENNDINKRNLYQLPNQLPGLISSNPPNSVQTPSFQFFPPQDP
AASQFTYRPSLPGHGPAMSNPLPNVRPVMPLPLPGQRIGNNSFHFQGGALRPLPPPGPHA
PSQMPPHPNPSPFVPNQQPTVGYSNLINSLMAQGVISLTNQAPSQDFVGIEFDPDTLKVR
HESAISALYGNLPRQCTTCGLRFKSQDEHSSHMDWHVTKNRMSKNRKQKPSRKWFVSETM
WLSGAEALGTESAPGFLPTETTEEKKEDEELAVPADEDQNTCALCGEPFEEFYSDETEEW
MYRGAVYLNAPNGITTGMDRSQLGSIIHAKCRSESTPCEDFVMDEGGTYEEGSQRKRMRS
NT seq
2523 nt
NT seq
+upstream
nt +downstream
nt
atgagcaatgagattgttcaaaagcctccaccatcaatcctcgttggtcgattcaaagct
ttgttgaatcaacgtcgtgaagaagatcctaggttgagaaattcgcaaccttcaacagaa
gaaattgttcagatttacgagcttttgttgtctgaactcacgtgtaatgttaaacctatc
atcactgatcttactatcattgctgaacaacatcgtaatcatgctaaaggaatcgctttt
gctatttgcaaccgtattgttgaggtgtctgcagatcaaaagctaccttcactctatctc
ttggacagtattgtgaagaatgttggccaggaatatgttcgatacttctcgcagcgtcta
cccgaagttttctgcgtggcatacagacaagttgatccaagtttacattctgctatgcga
catctctttggtacctggtcaaaagtcttccctccttctgtcttacggaagattgacgtg
gaattgcaattttctaaaccagttaataatcaaccatcaggcgttaattcccttagggct
tctgaatctcctcgaccaactcatgggatacatgttaacccaagatacgtaagacaaata
gaacactctacttcagttattgatagtgttgcaggtgaaaggttagactcaacaggaact
gctggaaatgcaaatttcggtcttcttgctagtaagattaatcaatttgtcccaagtagg
gttggaagatcatcgtcaccaccaagaattggacttgataggcatatgccctcatatatg
gatgaatatttagctgacaattctactggtaggacagtcgagagagaatctccccatcat
gctgttgattatggcctagttaaaggattaggtagagaagaagagtcgagtgagtggtcg
cgaaagccgttttctggtgatagtcggaagagatttcaaacttctatgacatatagcctt
agtaacggacaaccacgtcaaaatccaagagcactaattgatgcctatggtagtgacaaa
agccaagaaacttctggcagtaagcctttgttagttgagcggctggatagaaatggtatg
gataaggttatgacaacatcatggcagaatactgaagaggaggagttcgattgggaagat
atgagtccgacagtagtagaccatggtagaagtaatggtttcctgcaaccaactatcggt
ttctcatcagaaaagcctgttactgttgcagccaatgcaacttcttcagtgtcaagggtg
tttcctggtctcaattcaaatattgagtaccgtccaccagttttgcctgcagcttttgaa
acaaggcactccgtaaatgtgcatgctccacgtcctcccagcataactcctatatttcca
tcgaagaatcctgttaggaatcctttcgaatcaataaatgccaatagtaccattgtgagt
catggtctaatcaataggccttttcctatgcatgaacaatcgttgcacggtgttgagaac
aatgatatcaataaaagaaacctgtatcagctacctaatcagcttcctggtctgatttca
tctaacccgccaaacagtgtacaaacaccgtcattccagttttttccacctcaggatcca
gcagcgtcacaatttacttataggccatctttgccaggtcatggtcctgctatgagtaac
cccctgccaaatgtacgacctgttatgccactccctttgccaggccaaagaatcggaaac
aactcttttcatttccaggggggagctttgcgacctttacctccacctggcccacatgct
ccatcccagatgccacctcatcccaatcctagtccatttgtaccaaaccaacagccaact
gttggatattctaatttgattaattcactcatggcccaaggtgtaatctcattgactaat
caagccccttcacaggattttgttggcattgagtttgatccagatactctgaaggttcgt
catgaatctgcaatcagtgccttatacggtaatcttcctagacagtgcacaacttgtggc
ctccgattcaaatcccaagacgagcacagcagtcacatggattggcatgtgactaagaac
cgtatgtctaaaaaccgtaagcagaagccctctcgtaaatggtttgtgagtgagacgatg
tggcttagtggtgcagaggcattgggaactgaatcagctccaggttttttgccaaccgag
accactgaggaaaagaaagaagatgaagagttggcagttccggccgacgaggaccaaaat
acatgtgcattatgtggagaaccttttgaagagttttacagtgatgaaacggaggagtgg
atgtatagaggagctgtataccttaatgcgcctaatggaataacaacaggcatggacagg
tcgcagttaggctccattattcatgctaaatgcagatctgaatctaccccgtgtgaagat
tttgtgatggacgaagggggtacctatgaagaaggcagtcaaagaaaacgaatgcggagc
tga
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