Microbacterium testaceum: MTES_2980
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Entry
MTES_2980 CDS
T01423
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mts
Microbacterium testaceum
Pathway
mts03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mts00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
MTES_2980 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mts03400
]
MTES_2980 (mfd)
Enzymes [BR:
mts01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
MTES_2980 (mfd)
DNA repair and recombination proteins [BR:
mts03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
MTES_2980 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
CarD_TRCF_RID
TRCF
Helicase_C
ResIII
MFD_D3
RecG_dom3_C
DUF3638
Motif
Other DBs
NCBI-ProteinID:
BAJ75944
UniProt:
E8NAS7
LinkDB
All DBs
Position
3234703..3238290
Genome browser
AA seq
1195 aa
AA seq
DB search
MTVPGIVRALEQAESYREAASAASVDLSLSLVDGLDAPVIAGLVERRRAAGDPGAVLVIA
PTGRRAESLGPALDAVLPGAQVLHFPAWETLPHERLSPSPETVGRRLDVLRRIAAWNGEA
PLVVTASVRSALQPLAPGLGDVAPVELTVGGRGHELEAVTTRLVELAYHRVDMVSRRGEF
AVRGGILDVFPPVADHPYRVEFFGDEVDQIRAFSVADQRSLPGEVTTVTLVPSRELLLTP
AVRARAAALRDAYPGLRQLLEKMAEGIPAEGMESLIPVLIDDLTTLVDYLPGGSAVALVD
PERSLARATTLGDTNREFLEAAWSAATAGADTPVDLDSGDFVTLDDLHERASGRGGVWWQ
FSAFDSGAADAEDEGLTVGDDSAHRIKADAVPSFQGNVEGATAHVGELLADGWAVIVTAS
GPGMVDRARDVLAERGIAARRVDDVLTPPEPGVAHVVCAPLERGFELTEARFAVITETEF
YGRSVSGDNRGVKKLASRRRNVVDPLQLKPGDVVVHATHGIGKFLELTQREVSSGGRNAV
KTTKEYLVLEYAPAKRGYPGDKLFVPTDQLDLLSKYVGGEAPTLSKMGGSDWAAAKGRAR
KAVRDIAVELVKLYSARMASKGYAFGPDTPWQRELEEAFPFAETQDQLQTIDEIKADMEK
PIPMDRLLSGDVGFGKTEVAVRAAFKAIQDGKQVAMLVPTTLLVKQHLETFAERFAGFPV
TVRPLSRFQTDKEAKATLAGLTDGTVDMVIGTHRILTEKVIFKDLGLMIIDEEQRFGVEH
KDQLKKLKTNVDILAMSATPIPRTLEMAVTGIREMSTLATPPEDRHPILSYVGPRNDKQI
AAAIRRELLREGQVFYVHNRVSSIQRVAAHLAELVPEARIVVAHGQMGEHALEQVVDDFW
ERRADVLVSTTIIETGLDISNANTIIIDRADKYGLSQLHQLRGRVGRGRDRAYAYFLYDE
MKPLSETAADRLETIAVNNDLGSGMQVALKDLELRGAGNLLGAEQAGHIAGVGFDLYLRM
IGEAVSTFRGEDVDGPTELRLELPVDARLPEFYIDSERLRLEAYQKLSAAASATAKDDAI
DLVVEELRDRYGEPPAEVEGLVAIARLRRRAAQAGLADVVAMGSNLRIAPANLADSMRVR
LQRLYPKAKLVAGGDAMVVPLPQDADDANLIAWVRQLLDALWPLPAEKTAETASV
NT seq
3588 nt
NT seq
+upstream
nt +downstream
nt
gtgacagttcccgggatcgtgcgcgccctcgagcaggctgagtcgtatcgtgaggccgca
tccgcggcatccgtcgacctgtctctctccctcgtcgacgggctcgatgcccccgtcatc
gcgggcctcgtcgagcgtcgccgtgccgcgggtgacccgggcgccgttctggtgatcgcc
ccgaccggtcgacgggccgagtcgctggggccggccctggatgccgtgctccccggcgct
caggtgctgcacttccccgcgtgggagacgctgccgcacgagcgcctcagcccgagtcct
gagacggtcggccgtcgcctcgacgtgctgcgccgcatcgcggcctggaacggcgaggcg
ccgctggtcgtcacggcatccgtccgcagcgccctccagcccctcgcgcccggtctcggc
gacgtcgccccggtcgagctcacggtcgggggccgcggtcacgagctcgaggcggtgacc
acgcggctcgtcgaactggcgtaccaccgggtcgacatggtctcgcggcgcggggagttc
gcggtgcgcggcggcatcctggacgtcttcccgccggtggccgatcacccctaccgcgtc
gagttcttcggcgacgaggtcgaccagatccgcgccttctcggtcgccgaccagcgctcg
ctcccgggcgaggtcaccaccgtgacgctcgtccccagccgagagcttctgctcaccccc
gcggtgcgggcgcgcgccgccgcgctccgcgacgcgtacccgggcctgcgtcagctgctc
gagaagatggccgagggcatccccgccgagggcatggagtcgctgatcccggtgctgatc
gacgacctcaccaccctggtcgactacctccctggcggcagcgccgtcgccctcgtcgat
cccgagcgctcgctcgcccgcgcgaccacgctcggtgacaccaaccgcgagttcctcgag
gccgcctggtcggcggccaccgcgggggccgacaccccggtcgacctcgactccggcgac
ttcgtgacgctcgacgacctgcacgagcgcgcgagcggtcgcgggggagtgtggtggcag
ttcagcgccttcgattcgggagcggcggatgccgaggacgagggcctcacggtcggcgac
gactccgcgcaccggatcaaggccgacgccgtcccctcgttccagggcaatgtcgagggg
gccacggcgcacgtcggggagctcctcgccgacggctgggcggtgatcgtcacggcatcc
ggtccgggaatggtcgatcgcgcgcgcgacgtgctcgcggagcgcgggatcgcggcgagg
cgcgtcgatgacgtcctcaccccgcccgagcccggcgtggcgcacgtggtgtgcgctccg
ctcgagcgcggcttcgagctcaccgaggcgcggttcgccgtcatcaccgagaccgagttc
tacggccgctcggtcagcggcgacaaccggggtgtcaagaagctggcgtcgcggcggcgg
aacgtcgtcgacccgctgcagctcaagcccggcgacgtggtggtgcacgccacgcacggc
atcgggaagttcctcgagctgacccagcgcgaggtctccagcggcggccgcaacgcggtg
aagacgacgaaggagtacctcgtcctcgagtacgcgcccgccaagcgcggctacccgggc
gacaagctgttcgtgcccaccgaccagctcgacctgctgtcgaagtacgtcggcggcgag
gctccgaccctctcgaagatgggcggcagcgactgggccgcggcgaagggacgcgcgcgc
aaggccgtccgcgacatcgcggtcgagctggtgaagctgtactcggcgcgcatggcgtcc
aagggctacgccttcggtcccgacacgccctggcagcgggagctcgaggaggccttcccg
ttcgccgagacgcaggaccagctgcagacgatcgacgagatcaaggccgacatggagaag
ccgatcccgatggatcgccttctttccggcgacgtcggcttcggcaagaccgaggtcgcc
gtgcgcgccgcgttcaaagcgatccaggacggcaagcaggtcgcgatgctcgtgccgacg
accctgctcgtcaagcagcacctcgagaccttcgccgagcgtttcgccggattccctgtc
acggtacgcccgctttcgcgcttccagaccgacaaagaggcgaaggcgactctcgcgggt
ctcaccgacggcacggtcgacatggtcatcgggacccaccgcatcctcaccgagaaggtg
atcttcaaagacctgggactcatgatcatcgacgaggagcagcgcttcggtgtcgagcac
aaagaccagctgaagaagctcaagaccaacgtcgacatcctcgccatgagcgccacgccc
atcccgcgcacgctcgagatggccgtcaccgggatccgcgagatgtcgaccctggcgact
cctccggaggatcggcatccgatcctctcctacgtcgggccgcgcaacgacaagcagatc
gcggcggccatccgtcgcgagctgctgcgcgagggccaggtgttctacgtgcacaaccgc
gtgtcgtcgatccagcgcgtcgccgcccacctcgccgagctcgtccccgaggcgcggatc
gtcgtcgcgcacggccagatgggcgaacacgcgctcgagcaggtcgtcgacgacttctgg
gagcgtcgggccgacgtgctcgtgtcgaccaccatcatcgagaccggcctcgacatctcg
aacgcgaacacgatcatcatcgaccgcgccgacaagtacggcctctcgcagctgcaccag
ctgcgcgggcgcgtcgggcgcggccgcgaccgcgcgtacgcctacttcctgtacgacgag
atgaagccgctgtccgagaccgcggccgaccgcctcgagacgatcgccgtgaacaacgac
ctcggctcgggcatgcaggtcgcgctcaaagacctcgagctgcgcggcgcgggaaacctc
ctcggcgccgaacaggccggccacatcgccggcgtcgggttcgatctctacctgcgcatg
atcggcgaggccgtgtcgaccttccgcggcgaagacgtggacggtccgaccgagctgcgg
ctcgagctgccggtcgatgcgcgcctgcccgagttctatatcgacagcgagcgcctgcgc
ctcgaggcgtaccagaagctgtcggccgcggcatccgccaccgccaaggacgacgcgatc
gacctcgtggtcgaagaactgcgcgaccgctacggcgagcctcccgccgaggtcgagggt
ctcgtcgcgatcgcacgcctgcgccgccgggccgcgcaggcgggtctcgcggatgtcgtg
gcgatgggatcgaacctgcgcatcgcgccggcgaacctcgcggactcgatgcgcgtgcgc
ctgcagcggctgtacccgaaggcgaagctcgtcgccggtggggatgccatggtcgtgccg
ctcccacaggacgccgacgacgcgaacctcatcgcgtgggtgcgtcagctgctcgacgcg
ctgtggccgctccccgcggagaagaccgccgagacggcctcggtctga
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