Micromonospora tulbaghiae: CSH63_20075
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Entry
CSH63_20075 CDS
T05651
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mtua
Micromonospora tulbaghiae
Pathway
mtua03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mtua00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CSH63_20075 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mtua03400
]
CSH63_20075 (mfd)
Enzymes [BR:
mtua01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CSH63_20075 (mfd)
DNA repair and recombination proteins [BR:
mtua03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CSH63_20075 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
CarD_TRCF_RID
Helicase_C
ResIII
AAA_22
SLFN-g3_helicase
RecG_dom3_C
UB2H
Motif
Other DBs
NCBI-ProteinID:
AYF29725
UniProt:
A0A386WMU3
LinkDB
All DBs
Position
complement(4405285..4408941)
Genome browser
AA seq
1218 aa
AA seq
DB search
MLTGLFSAALADPGLARARDLARSGAAQVDGLDLTAPAALRPFAVAAVAADEPAGGAGRP
VLAVTATTREADDLASALGSLLPPEQVAVFPSWETLPHERLSPRSDTVGRRLAVLRRLAH
PDAADAHGRTGPLRVVVAPVRSLLQPQLKGLGDLEPVQLAAGDEADLEAVARRLTDMAYA
RVDLVTKRGEFAVRGGILDVFPPTDEHPSRVEFWGDEVEEIRTFAVADQRTIEGVAQLWA
PPCRELLLTPAVRERAAALAAEHPELAEILDKLAEGIPVEGMESLAPALIGADALELLVD
CMPAGTHILLCDPERIRTRAHDLVRTSEEFLQASWAAAAVGGQAPVDLGAAAFKTLAEVR
TAARALRQPWWTLAPFGLVEADAAPARQPWEDEPAAVDVTPDDAIAVSLAAQPAPLYHGE
TARVVDDLKRWAGEGWSIALVFEGHGPAQRAVEVLRDAGLGARLTEEVPTAPAPGELLVS
CGCLTAGFVDEASKFVLLTGNDVTGGRGTSTRDMRKMPSRRRNTIDPLELKAGDFVVHEQ
HGIGRYVELVQRTVNGASREYLVIEYAPSKRGQPGDRLFVPTDQLDQLSRYVGGEQPTLH
KMGGSDWQKSKARARKAVREIAAQLIQLYAARKASKGHNFGPDTPWQRELEDAFPWQETP
DQMAAIEEVKRDMEQTVPMDRLICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLVQ
QHYNTFAERMSQFPVSIRQLSRFQTPKETEQTLEMVAAGTVDIVIGTHRLLQASTRFKQL
GLVIIDEEQRFGVEHKEHLKTLRASVDVLAMSATPIPRTLEMAITGIREMSTIATPPEER
HPVLTFVGAYDDRQVAASIHRELLRDGQVFYLHNRVESIEKTARKLRELVPEARVAVAHG
QMGEEALEKVMVGFWEKEFDVLVCTTIVESGIDIPNANTLIVERADLLGLAQLHQIRGRV
GRGRERAYAYFLYPPEKPLTENAHERLATIAQHTELGAGMYVAMKDLEIRGAGNLLGGEQ
SGHIEGVGFDLYVRMVGEAVSAFKGESTEEETEVKVDLPIDAHLPHDYVAVERLRLEMYR
KLAEARDSERLREVVAEMTDRYGEPPAPVQNLVAVARFRLLARRYGLTDVSMQGKHIRFG
PLPLPDSKQMRLKRYHPDSVYKPALDQVSVPRPSTRRIGGEPLRDQALLEWCGQLLADVL
GKPEELAGVASPAVASGR
NT seq
3657 nt
NT seq
+upstream
nt +downstream
nt
atgctcaccggactcttctccgccgccctggccgacccggggctggcccgggcgcgtgac
ctggcgcgctccggtgccgcgcaggtcgacgggctcgacctgaccgccccggccgcgctg
cgcccgttcgcggtggcagcggtcgccgccgacgagccggccggcggcgcgggccgcccc
gtgctcgcggtcaccgccaccacccgcgaggccgacgacctggcctccgcactgggcagc
ctgctgccgccggagcaggtggcggtcttcccctcctgggagacgctgccgcacgagcgc
ctgtcgccccgttccgacacggtcggacggcgcctcgccgtgctgcgccggctcgcccac
ccggacgccgccgacgcgcacggccgcaccgggccgctgcgggtcgtcgtcgcgccggtc
cgctcgctgctccagccgcagctcaagggcctcggcgacctggagccggtgcagctcgcc
gccggggacgaggccgacctggaggcggtcgcccgccggctcaccgacatggcgtacgcc
cgggtcgacctggtcaccaagcgcggcgagttcgccgtacgcggcggcatcctggacgtc
tttccgcccaccgacgaacacccgtcccgggtcgagttctggggcgacgaggtggaggag
atccgcaccttcgcggtcgccgaccagcgcaccatcgagggcgtcgcgcagctctgggcg
ccgccctgccgggaactgctgctgacccctgcggtgcgggagcgggccgccgcgctggcc
gccgagcacccggagctggccgagatcctggacaagctggccgagggcatcccggtcgag
ggcatggagtccctcgcccccgcgctgatcggcgccgacgcgctggaactgctcgtcgac
tgcatgccggccggcacccacatcctcctctgcgaccccgagcgcatccgcacccgcgcg
cacgacctggtccgtacctcggaggagttcctccaggccagctgggccgcggccgccgtc
ggcggccaggccccggtcgacctcggcgccgccgccttcaagaccctggccgaggtacgc
acggcggcccgcgccctgcgccagccctggtggacgctcgcgccgttcggcctggtcgag
gcggacgcggcaccggcccggcagccctgggaggacgagccggccgctgtcgacgtcacc
cccgacgacgccatcgcggtgagcctcgccgcccagccggcgccgctctaccacggcgag
accgcccgggtggtcgacgacctcaagcgctgggccggcgagggctggtcgatcgcgctc
gtgttcgaggggcacggtcccgcccagcgggccgtcgaggtgctgcgcgacgccggtctc
ggcgctcggctcaccgaggaggtgcccaccgcgcccgcacccggcgagctgctcgtgtcc
tgcggctgcctgaccgccgggttcgtcgacgaggcgtcgaagttcgtgctgctcaccggc
aacgacgtcaccggcggccggggcacctccacccgcgacatgcgcaagatgcccagccgg
cggcgcaacaccatcgacccgctggagctgaaggccggcgacttcgtggtgcacgagcag
cacggcatcggccgctacgtcgagctggtgcagcgcaccgtcaacggcgccagccgcgaa
tacctggtcatcgagtacgcgccgagcaagcgcggccagcccggcgaccgcctgttcgtc
cccaccgaccagctcgaccagctctcccgctacgtcggcggcgagcagcccacgctgcac
aagatgggcggctcggactggcagaagtccaaggcccgggcccgcaaggcggtccgcgag
atcgccgcccagctcatccagctctacgccgcccgcaaggcgtccaaggggcacaacttc
ggccccgacaccccgtggcagcgggagctggaggacgcgttcccctggcaggagacaccc
gaccagatggccgccatcgaggaggtcaagcgggacatggagcagaccgtcccgatggac
cggctgatctgcggcgacgtcggctacggcaagaccgagatcgcggtacgggcggcgttc
aaggcggtgcaggacggcaagcaggtggccgtgctggtgcccaccacgctgctggtgcag
cagcactacaacacgttcgccgagcggatgagccagttcccggtgtcgatccggcagctg
tcccggttccagacgccgaaggagaccgagcagacgctggagatggtcgccgccggcacc
gtcgacatcgtcatcggcacccaccggctgctccaggcgtccacccggttcaagcagttg
ggcctggtgatcatcgacgaggagcagcggttcggcgtcgaacacaaggagcacctgaag
acgctgcgcgcctcggtcgacgtgctcgccatgtcggccaccccgatcccgcgcacgctg
gagatggcgatcaccggcatccgggagatgtccaccatcgccacgccgccggaggagcgg
cacccggtgctcacgttcgtcggcgcgtacgacgaccggcaggtggccgcgtccatccac
cgtgagctgctgcgcgacggtcaggtcttctacctgcacaaccgggtcgagtcgatcgag
aagacggcccgcaagctccgggagctggtgccggaggcccgcgtcgcggtggcgcacgga
cagatgggcgaggaagcgctggagaaggtgatggtcggcttctgggagaaggagttcgac
gtcctcgtctgcaccacgatcgtcgagtccggcatcgacatcccgaacgccaacacgctc
atcgtggagcgggccgacctgctcggcctggcccagctgcaccagatccgcggccgggtc
ggccggggccgggagcgggcgtacgcgtacttcctctacccgccggagaagccgctcacc
gagaacgcgcacgagcggctcgcgaccatcgcccagcacaccgaactcggcgccggcatg
tacgtggcgatgaaggacctggagatccgcggcgctggcaacctgctcggcggcgagcag
tccggccacatcgagggcgtcggcttcgacctgtacgtgcggatggtcggcgaggcggtg
tccgccttcaagggcgagagcaccgaggaggagacggaggtcaaggtcgacctgccgatc
gacgcgcacctgccgcacgactacgtggccgtggagcggctgcgcctggagatgtaccgc
aagctcgccgaggcccgcgactccgaacgcctgcgcgaggtggtggccgagatgaccgac
cggtacggcgagccgcccgcgccggtgcagaacctggtcgcggtggcccggttccggctg
ctggcccgccgctacgggctcaccgacgtgtcgatgcagggcaagcacatccggttcggc
ccgctgccgctgcccgactcgaagcagatgcggctcaagcgctaccacccggactcggtc
tacaagccggcgctcgaccaggtcagcgtgccccggccgagcacccggcggatcggcggc
gagccgttgcgcgaccaggcgctgctggagtggtgcgggcagctcctggccgacgtcctc
ggcaagcccgaggagctggccggtgttgccagccccgcagtggcgagcggacgatga
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