Mycobacterium tuberculosis Haarlem/NITR202: I917_06615
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Entry
I917_06615 CDS
T02654
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
mtuh
Mycobacterium tuberculosis Haarlem/NITR202
Brite
KEGG Orthology (KO) [BR:
mtuh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
I917_06615
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mtuh03400
]
I917_06615
Enzymes [BR:
mtuh01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
I917_06615
DNA repair and recombination proteins [BR:
mtuh03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
I917_06615
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
AGL22654
UniProt:
R4LTB9
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All DBs
Position
1049498..1050739
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AA seq
413 aa
AA seq
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MLVSWAVPKNLPDNTSVNHLAIHTEDHPLEYATFEGAIPSGEYGAGKVIIWDSGTYDTEK
FHDDPHTGEVIVNLHGGRISGRYALIRTNGDRWLAHRLKNQKDQKVFEFDNLAPMLATHG
TVAGLKASQWAFEGKWDGYRLLVEADHGAVRLRXRSGRDVTAEYPQLRALAEDLADHHVV
LDGEAVVLDSSGVPSFSQMQNRGXDTRVEFWAFDLLYLDGRALLGTRYQDRRKLLEXLAN
ATSLTVPELLPGDGAQXFACSRKHGWEGVIAKRRDSRYQPGRRCASXVKDKHWNTQEVVI
GGWRAGEGGRSSGVGSLLMGIPGPXGLQFAGRVGTGLSERELANLKEMLAPLHTDESPFD
VPLPARDAKGITYVKPALVAEVRYSEWTPEGRLRQSSWRGLRPDKKPSEVVRE
NT seq
1242 nt
NT seq
+upstream
nt +downstream
nt
gtgctggtctcgtgggcggtaccgaaaaacctgcccgacaacacatcggttaaccatcta
gcgatacacaccgaggaccacccgctggaatacgccacgttcgagggcgcgattcccagc
ggggagtacggcgccggcaaggtgatcatctgggactccggcacttacgacaccgagaag
ttccacgatgacccgcacacgggggaggtcatcgtgaatctgcacggcggccggatctct
gggcgttatgcgctgattcggaccaacggcgatcggtggctggcgcaccgcctaaagaat
cagaaagaccagaaggtgttcgagttcgacaatctggccccaatgcttgccacgcacggc
acggtggccggtctaaaggccagccagtgggcgttcgaaggcaagtgggacggctaccgg
ttgctggttgaggctgaccacggcgccgtgcggctgcggkcccgcagcgggcgcgatgtc
accgccgagtatccgcaattgcgggcattggcggaggatctcgccgatcaccacgtggtg
ctggacggcgaggccgtcgtacttgactcctctggtgtgcccagcttcagccagatgcag
aatcggggcckcgacacccgtgtcgagttctgggcgttcgacctgctctacctcgacggc
cgcgcgctgctaggcacccgctaccaagaccggcgtaagctgctcgaamccctagctaac
gcaaccagtctcaccgttcccgagctgctgcccggtgacggcgcccaagsgtttgcgtgc
tcgcgcaagcacggctgggagggcgtgatcgccaagaggcgtgactcgcgctatcagccg
ggccggcgctgcgcgtcgtrggtcaaggacaagcactggaacacccaggaagtcgtcatt
ggtggctggcgcgccggggaaggcgggcgcagcagtggcgtcgggtcgctgctcatgggc
atccccggtccagktgggctgcagttcgccgggcgggtcggtaccggcctcagcgaacgc
gaactggccaacctcaaggagatgctggcgccgctgcataccgacgagtcccccttcgac
gtaccactgcccgcgcgtgacgccaagggcatcacatatgtcaagccggcgctggttgca
gaggtgcgctacagcgagtggactccggagggccggctgcgtcaatcaagctggcgtggg
ctgcggccggacaagaaacccagtgaggtggtgcgcgaatga
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