Methylosinus trichosporium: CQW49_03455
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Entry
CQW49_03455 CDS
T05155
Name
(GenBank) DNA polymerase LigD
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
mtw
Methylosinus trichosporium
Pathway
mtw03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
mtw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
CQW49_03455
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mtw03400
]
CQW49_03455
Enzymes [BR:
mtw01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
CQW49_03455
DNA repair and recombination proteins [BR:
mtw03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
CQW49_03455
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_ligase_OB_2
Motif
Other DBs
NCBI-ProteinID:
ATQ67045
UniProt:
A0A2D2CWE5
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All DBs
Position
complement(733756..735291)
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AA seq
511 aa
AA seq
DB search
MIARAAASLEAYRAKRDFSRTREPRGDEARDAAEQGAYVVQKHRARRTHFDLRLELDGVL
KSWAVTRGPSLDPSEKRLAVRTEDHPLEYGRFEGNIAAGEYGAGEVMLWDRGHWSPQGDV
RRGIEEGHFKFTLAGERLRGGFALTRLPRRGKERRENWLLVKEKDRFADRACDPVHEWTK
SVASGRGFAEIAAEDERPAHLPKFRAPQLATLAAAPPTGRDWLHEIKFDGYRAIVAAAGG
TARVYTRSGLDWTDKFRRIAEAVAQLPMRSALVDGEIVATDECGRSDFGRLQKALETHAD
SLVFYVFDLLEIDGEDIAKAPLEQRKARLAELTREAPAAIRYSDHVRGEGPRFLEECCRM
RLEGVVSKRADRPYVSGRRLSWIKTKCIGRDEFVVGGYRPSAKKGRPFASLLLGEYEDGV
LRYRGRVGAGFSDADLGQVAERLEARKNSPFAELPRDIARAARYVEPRLVVEIAYAERTS
EGVLRHPRFVALREDKPAKEVRAAPRRGGKR
NT seq
1536 nt
NT seq
+upstream
nt +downstream
nt
atgatcgcgcgcgccgcggcctcgctggaagcctatcgggccaagcgcgatttctcccgc
acgcgcgagccgcgcggcgacgaggcgcgggatgcggcggagcagggcgcctatgtcgtg
cagaagcatcgcgcccgccgcacgcatttcgatttgcgtctcgagctcgacggcgtgttg
aagagctgggcggtgacgcgcgggccgagcctcgacccgagcgagaagcgcctcgcggtg
cgcaccgaggatcatccgctcgaatatggacgcttcgaggggaacatcgccgccggcgaa
tatggcgcgggcgaggtgatgctgtgggatcgcggtcattggtcgccgcagggcgacgtc
cgtcgcggcatcgaagagggtcatttcaaattcacgctcgcgggcgagcgcttgcgcggc
ggcttcgcgctgacgcgtctgccgcggcgcggcaaggagcggcgcgagaattggctgctg
gtcaaggagaaggaccgcttcgccgatcgcgcctgcgatcccgtccatgaatggacgaag
agcgtcgccagcggacgcggcttcgccgagatcgccgcggaagacgagcggccggcgcat
ttgccgaagtttcgcgcgccgcagctggcgacgctggcggcggcgccgccgaccggccgc
gactggctgcacgagatcaaattcgacggctatcgcgccatcgtcgctgcggcgggcgga
acggcgcgggtctacacgcgctcgggcctggattggaccgacaagtttcgtcgcattgcc
gaggcggtcgcgcaattgccgatgcgcagcgcgctcgtcgacggcgagatcgtcgccacc
gacgaatgcggacgcagcgatttcggacgattgcagaaggcgctggagacgcatgccgac
agcctcgtcttctatgtgttcgatctgctcgagatcgatggcgaggacattgcgaaggcg
ccgctcgagcagcgcaaggcgcggctcgccgagctgacgcgcgaggcgccggcggcgatc
cgctacagcgatcatgtgcgcggcgaggggccgcgctttctcgaggagtgctgccgcatg
cgcctcgaaggcgtcgtgtcgaagcgcgccgaccggccttatgtctccggccgccggctc
tcctggatcaagacgaaatgcatcggacgcgacgagttcgtggtcggcggctatcggccc
tcggccaagaaggggcggcctttcgcctcgctgctgctcggcgaatatgaggacggcgtc
ctgcgctaccgcggccgcgtcggcgccggcttctccgacgccgatctcgggcaagtggcg
gagcggctcgaggcgcgcaagaattcgcctttcgcagagcttccgagggacatcgcccgc
gctgcgcgctatgtcgagccacgcctcgtcgtcgagatcgcttatgcggaacggacgagc
gagggcgtgctgcgtcatccgcgcttcgtggcgttgcgcgaggacaagcccgcgaaagaa
gtgcgcgcggcgccgcggcggggagggaagcggtga
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