KEGG   Methylosinus trichosporium: CQW49_03455
Entry
CQW49_03455       CDS       T05155                                 
Name
(GenBank) DNA polymerase LigD
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
mtw  Methylosinus trichosporium
Pathway
mtw03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:mtw00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    CQW49_03455
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:mtw03400]
    CQW49_03455
Enzymes [BR:mtw01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     CQW49_03455
DNA repair and recombination proteins [BR:mtw03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     CQW49_03455
SSDB
Motif
Pfam: LigD_N DNA_ligase_A_M DNA_ligase_A_C DNA_ligase_OB_2
Other DBs
NCBI-ProteinID: ATQ67045
UniProt: A0A2D2CWE5
LinkDB
Position
complement(733756..735291)
AA seq 511 aa
MIARAAASLEAYRAKRDFSRTREPRGDEARDAAEQGAYVVQKHRARRTHFDLRLELDGVL
KSWAVTRGPSLDPSEKRLAVRTEDHPLEYGRFEGNIAAGEYGAGEVMLWDRGHWSPQGDV
RRGIEEGHFKFTLAGERLRGGFALTRLPRRGKERRENWLLVKEKDRFADRACDPVHEWTK
SVASGRGFAEIAAEDERPAHLPKFRAPQLATLAAAPPTGRDWLHEIKFDGYRAIVAAAGG
TARVYTRSGLDWTDKFRRIAEAVAQLPMRSALVDGEIVATDECGRSDFGRLQKALETHAD
SLVFYVFDLLEIDGEDIAKAPLEQRKARLAELTREAPAAIRYSDHVRGEGPRFLEECCRM
RLEGVVSKRADRPYVSGRRLSWIKTKCIGRDEFVVGGYRPSAKKGRPFASLLLGEYEDGV
LRYRGRVGAGFSDADLGQVAERLEARKNSPFAELPRDIARAARYVEPRLVVEIAYAERTS
EGVLRHPRFVALREDKPAKEVRAAPRRGGKR
NT seq 1536 nt   +upstreamnt  +downstreamnt
atgatcgcgcgcgccgcggcctcgctggaagcctatcgggccaagcgcgatttctcccgc
acgcgcgagccgcgcggcgacgaggcgcgggatgcggcggagcagggcgcctatgtcgtg
cagaagcatcgcgcccgccgcacgcatttcgatttgcgtctcgagctcgacggcgtgttg
aagagctgggcggtgacgcgcgggccgagcctcgacccgagcgagaagcgcctcgcggtg
cgcaccgaggatcatccgctcgaatatggacgcttcgaggggaacatcgccgccggcgaa
tatggcgcgggcgaggtgatgctgtgggatcgcggtcattggtcgccgcagggcgacgtc
cgtcgcggcatcgaagagggtcatttcaaattcacgctcgcgggcgagcgcttgcgcggc
ggcttcgcgctgacgcgtctgccgcggcgcggcaaggagcggcgcgagaattggctgctg
gtcaaggagaaggaccgcttcgccgatcgcgcctgcgatcccgtccatgaatggacgaag
agcgtcgccagcggacgcggcttcgccgagatcgccgcggaagacgagcggccggcgcat
ttgccgaagtttcgcgcgccgcagctggcgacgctggcggcggcgccgccgaccggccgc
gactggctgcacgagatcaaattcgacggctatcgcgccatcgtcgctgcggcgggcgga
acggcgcgggtctacacgcgctcgggcctggattggaccgacaagtttcgtcgcattgcc
gaggcggtcgcgcaattgccgatgcgcagcgcgctcgtcgacggcgagatcgtcgccacc
gacgaatgcggacgcagcgatttcggacgattgcagaaggcgctggagacgcatgccgac
agcctcgtcttctatgtgttcgatctgctcgagatcgatggcgaggacattgcgaaggcg
ccgctcgagcagcgcaaggcgcggctcgccgagctgacgcgcgaggcgccggcggcgatc
cgctacagcgatcatgtgcgcggcgaggggccgcgctttctcgaggagtgctgccgcatg
cgcctcgaaggcgtcgtgtcgaagcgcgccgaccggccttatgtctccggccgccggctc
tcctggatcaagacgaaatgcatcggacgcgacgagttcgtggtcggcggctatcggccc
tcggccaagaaggggcggcctttcgcctcgctgctgctcggcgaatatgaggacggcgtc
ctgcgctaccgcggccgcgtcggcgccggcttctccgacgccgatctcgggcaagtggcg
gagcggctcgaggcgcgcaagaattcgcctttcgcagagcttccgagggacatcgcccgc
gctgcgcgctatgtcgagccacgcctcgtcgtcgagatcgcttatgcggaacggacgagc
gagggcgtgctgcgtcatccgcgcttcgtggcgttgcgcgaggacaagcccgcgaaagaa
gtgcgcgcggcgccgcggcggggagggaagcggtga

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