Methylosinus trichosporium: CQW49_16665
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Entry
CQW49_16665 CDS
T05155
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mtw
Methylosinus trichosporium
Pathway
mtw03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mtw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CQW49_16665 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mtw03400
]
CQW49_16665 (mfd)
Enzymes [BR:
mtw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CQW49_16665 (mfd)
DNA repair and recombination proteins [BR:
mtw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CQW49_16665 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
CarD_TRCF_RID
Helicase_C
UvrB_inter
ResIII
AAA_16
UB2H
SecA_DEAD
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
ATQ69331
UniProt:
A0A2D2D2W1
LinkDB
All DBs
Position
complement(3492531..3496052)
Genome browser
AA seq
1173 aa
AA seq
DB search
MTDLKKAIARIEAGDALAFTHVPDGFDAFVCADLARALARGAEGKPAVFVHVARDAQRSA
AFREALRFAAPEVEALDVPGWDCQPYDRVSPNAAISARRMTALARLARSKSSAERPRIVT
TTVDCLLQRVPPLEAVAADTFSAAPGNVVHMDELARWLEANGFLRSSAVRETGEYAQRGG
ILDLYAPGMPTPVRLDFFGDTLESIRSFDPESQRTIGQLRALDLVPMSELRLTSDSMRRF
RQAYTTRFGGQTRGDHLYEAISEGRRFQGAEHWLPLFYPRMGSLFDYIGSAPLMLDQLVD
EAAGERAAQIADYYDARKFAYDAAPAEASYKPLEPKELYLSVEEWRGQIEARGRARFSPF
AAPEGAEKTAIDCAARPGRDFAPERNDENANVFEAAVDHVKALRGAGKSVVVAGWSDGSC
ERLGSVLAEHGLRDVQTVSSLPAALALGKGATALAVLGVEHGFETDGLVVIGEQDILGDR
MVRRRRKTKHTENLLGEIAALSAGDLVVHVDHGIGRFIGLETITAAGAPHDCLEIHYAGG
DKLYLPVENIELLSRYGSEDTEAQLDKLGGVGWQTRKARMKNRIREMAKGLIAIAAQRML
RQATKLAPPEGLYDEFCARFPYDETEDQAAAIEAVLDDLSSGRPMDRLVCGDVGFGKTEV
ALRAAFCAAINGRQVAVVVPTTLLARQHYKTFSTRFSGLPIRVAQLSRMTTAADARLAKS
GIADGTIDIVVGTHAVLGKTISFKDLGLVIIDEEQHFGVGHKERLKELRAEVHVLTLSAT
PIPRTLQLAMTGVRELSLIATAPVDRLAVRSFVSPFDPLIVREALLRERYRGGQAFFVCP
RIEDLEDAAAFLREVVPEAKFVMAHGQMAAGDLEERMTAFYDGKYDILLSTTIVESGLDI
PTANTLIVWRADMFGLAQLYQLRGRVGRSKTRAYALFTTPANKTITPQAQKRLEVLQSLD
TLGAGFQLASHDLDIRGAGNLLGDEQSGHIKEVGYELYQQMLGDAITLLKAGIEEPQEEA
WSPTIAIGAPVTIPEDYVPDLTLRLQLYRRLSTLETDADIESFAAELIDRFGAFPPEVEQ
LLKIVAIKAMCRRAHVEKVEAGPKGVIIAFRDGSFADPAGLARYVMDQGSQAKVRPDMRI
VFIRDFADMKGRLEGTRRILRTLVSIAEKKKAA
NT seq
3522 nt
NT seq
+upstream
nt +downstream
nt
gtgaccgatctcaaaaaggccatcgcccgcatcgaggccggcgacgcgctcgccttcacc
catgttcccgacggtttcgacgccttcgtctgcgccgacctcgcccgcgctctggcgcgc
ggcgcggagggcaagccggccgtcttcgtccatgtggcgcgcgacgcgcagcgctcggcc
gcctttcgcgaggcgctgcgcttcgccgcgcccgaggtcgaggcgctggacgtgcccggc
tgggactgccagccctatgaccgcgtctcgcccaatgcggcgatcagcgcgcggcgcatg
accgcgctcgcgcgtctcgcccgctccaaatcctcggccgagcggccgcgaatcgtcacc
accacggtcgattgcctgctacagcgcgtgccgccgctcgaggccgtcgccgccgacaca
ttctccgccgcgcccggcaatgtcgtgcatatggatgagctggcgcgctggctcgaggcc
aatggcttcctgcgctcctcggccgtgcgcgagaccggcgaatacgcccagcgcggcggc
attctcgatctctacgcgccgggcatgccgacgccggtgcggctcgatttcttcggcgac
acgctcgaatccatccgcagcttcgatccggagagtcagcgcaccatcggccagctgcgc
gcgctcgatctcgtgccgatgagcgaattgcggctgacgagcgactccatgcgccggttc
cgccaggcctacaccacgcgcttcggcggacagacgcgcggcgaccatctctatgaggcg
atcagcgagggccgccgctttcagggcgccgagcattggctgccgctattctatccgcgc
atgggcagcctgttcgattatatcggctccgctcccttgatgctcgaccagctcgtcgac
gaagcggcgggggagcgcgccgcgcagatcgccgattattacgacgcgcgcaaattcgcc
tatgacgccgcgcccgccgaggcgagctacaagccgctggagccgaaagaactctatctc
tccgtcgaggagtggcgcggacagatcgaggcgcgcggccgcgcgcgcttctcgcccttc
gccgcgccggagggcgccgagaagaccgcgatcgattgcgcggcgcggccgggccgcgat
tttgcgcccgagcgcaatgacgagaacgccaatgtcttcgaggccgcggtcgatcatgtg
aaggcgctgcgcggcgccggcaagagcgtcgtcgtcgccggctggtcggacggctcctgc
gagcgcctcggcagcgtgctcgccgagcatggactgcgcgacgtgcagaccgtgtcgtcg
ctgccggcggcgctggcgctcggcaaaggcgcaacggcgctcgccgtgctcggcgtcgag
catggcttcgagacagacgggctcgtcgtcatcggcgagcaggacattctcggcgaccgc
atggtgcgtcgccgccgcaagaccaagcatacggaaaatctgctcggcgagatcgccgcg
ctctcggccggcgatctcgtggtgcatgtcgatcacggcatcggccgcttcatcggcctc
gagaccatcaccgccgccggcgcgccgcacgactgcctcgagattcattacgccggcggc
gataagctctatctgccggtcgagaacatcgagctcttgtcgcgctacggctccgaggac
accgaggcgcagctcgacaaattgggcggcgtcggctggcagacgcgcaaggcgcggatg
aagaaccgtattcgcgagatggccaagggcctcatcgcgatcgcggcccagcgcatgctg
cgtcaggcgacgaagctcgcgccgccggaagggctctacgacgaattctgcgcgcgcttt
ccctatgacgagaccgaggatcaggccgcggcgatcgaggcggtgctcgacgatcttagc
tcgggtcggccgatggatcggcttgtctgcggcgacgtcggcttcggcaagacggaagtg
gcgctgcgcgccgccttctgcgcggcgatcaacggacgtcaggtcgccgtcgtcgtgccg
acgacattgctcgcgcgccagcattacaagaccttctcgacgcgcttctccggcctgccg
atccgcgtcgcgcaattgtcgcgcatgaccaccgccgccgatgcgcgcctcgccaagagc
ggaatcgccgacggcacgatcgacatcgtcgtcggcacacacgccgtgctcggcaagacg
atctcgttcaaggatctcggcctcgtcatcatcgacgaggagcagcatttcggcgtcggc
cataaggagcgcttgaaggagctgcgcgcggaagtgcatgtgctgactttgtcggcgacg
ccgatcccgcgcacgctgcagctcgccatgaccggcgtgcgcgaattgtcgctgatcgcc
acggcgcccgtcgatcgcctcgccgtgcgcagcttcgtctcgcccttcgatccgctgatc
gtgcgcgaggcgctgctgcgcgagcgctatcgcggcggacaggccttcttcgtttgtccg
cgcatcgaggatttggaggacgccgccgccttcctgcgcgaggtcgtgcccgaggcgaaa
ttcgtcatggcgcatgggcagatggcggcgggcgatctcgaagagcgcatgaccgccttc
tatgacgggaaatacgacatccttctctcgacgacgatcgtcgaatccggcctcgacatt
ccgaccgccaacacgctgatcgtctggcgcgccgacatgttcggcctcgcgcagctctat
cagctgcgcggccgcgtcggccgctccaagacgcgcgcctatgcgctgttcacgacgccc
gccaataagaccatcacgccgcaggcgcaaaagcggctcgaggtgctgcagagtctcgac
acgctcggcgccggcttccagctcgcgagccacgacctcgacattcgcggcgccggcaat
ctcctcggcgacgagcagtccggccatatcaaggaggtcggctacgagctctatcagcag
atgctgggcgatgcgatcacgctgctgaaggccggaatcgaagagccgcaggaagaggcg
tggtcgccgaccatcgccattggcgcgccagtgacgataccggaagactatgtccccgat
ctcacgctgcgcctgcagctctatcgccgcctctcgacgctggagaccgacgccgacatc
gaatccttcgcggcggagctcatcgaccgcttcggcgccttcccgccggaggtggagcaa
ttgctgaagatcgtggcgatcaaggccatgtgccggcgcgcccatgtggagaaggtggag
gcggggccgaaaggcgtcatcatcgccttccgcgacggcagcttcgccgaccccgccggc
ctcgcccgctatgtgatggaccagggatcgcaggccaaggtgcgcccggacatgcgtatc
gtgttcatccgcgatttcgccgatatgaagggccggctcgaagggacgcgccgcattctg
cgcacgctggtgtcgatcgcggagaagaagaaggcggcgtga
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