Mycolicibacterium tokaiense: MTOK_12340
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Entry
MTOK_12340 CDS
T06987
Symbol
recD
Name
(GenBank) RecBCD enzyme subunit RecD
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
mty
Mycolicibacterium tokaiense
Pathway
mty03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
mty00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
MTOK_12340 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mty03400
]
MTOK_12340 (recD)
Enzymes [BR:
mty01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
MTOK_12340 (recD)
DNA repair and recombination proteins [BR:
mty03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
MTOK_12340 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
AAA_30
UvrD_C_2
Viral_helicase1
AAA_11
Helicase_RecD
UvrD-helicase
AAA_22
SH3_13
AAA_16
PhoH
AAA_25
AAA_28
AAA_29
NTPase_1
nSTAND3
AAA_5
TrwB_AAD_bind
AAA_24
AAA
SLFN-g3_helicase
CbiA
Motif
Other DBs
NCBI-ProteinID:
BBY85452
LinkDB
All DBs
Position
complement(1282721..1284463)
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AA seq
580 aa
AA seq
DB search
MTDLYEWRRVHGARGLLRQFNDAGVLEAADVHVAMRLTELAGETDESVALATALAVRGLR
GGSVCVDLSTVRTDTATDAEVALPWPEVTPWLEAVRASPLLGAPPVLRLYDRHLLYLDRY
FREEEQVCADLLATRSPEVPVAEAALAAGLDRVFPAGVYPEQRAAAQIALSQWTTVLTGG
PGTGKTTTVAGLLALLAEQAELTGHTRPRIALAAPTGKASARLQQAVQAQIDHLAPQDRA
RLSGLHAVTLHRLLGRSWKNSGRFVHNRANRLPYDVIVVDETSMVPLTMMARLLESVRPA
TRLILVGDPDQLASVEAGAVLADLVDGLGARRDLQVAALRTSHRFGESIGALAGAVRRGD
GDEVLTLLRSGNEHIEFIEERSAQLRDILVSHALQVRAAALRGDAGDALAALESHRLLCA
HREGPHGVRHWNRQIERWLAEETGEGRWADWYAGRPVLVTENDYGLGLYNGDTGVTVRAG
DQLRVALGGAGAVVEFATSRLAHVETMHALTIHKSQGSQADDVTVLLPSEDSRLLTRELF
YTAITRATTRVRVVGTEAGVRAALARRVVRATGLRQRLAQ
NT seq
1743 nt
NT seq
+upstream
nt +downstream
nt
atgaccgatctgtacgaatggcgtcgtgtgcacggcgctcgggggctgctgcgccagttc
aacgacgccggtgtgctggaggccgccgatgtccacgtggcgatgcggctgaccgagctg
gccggcgaaaccgacgaatccgtggcgctggcaacggcactggcggtgcgcgggctgcgc
ggcgggtcggtgtgcgtggacctgtcgaccgtccggaccgacaccgccacagacgccgag
gtggcattgccgtggccagaggtgacaccgtggctggaggccgtgcgggccagcccgttg
ctcggcgcgccgccggtcctgcgactctacgaccggcacctgctgtacctggaccgctac
ttccgcgaagaggagcaggtgtgcgccgatctgctggccacccgctctcccgaggtgccg
gtggccgaggccgcgctggccgcggggctggaccgggtgttcccggcgggcgtctacccc
gagcaacgtgcggccgcccagatcgcgttgtcgcagtggacaaccgttctgaccggcggt
cccggcaccggaaagaccaccaccgtggcggggttgttggcgctgctggccgaacaggcc
gaactgaccgggcacacccggccccggatcgcgctggcggcgcccaccggcaaggcatcg
gcgcggttgcagcaggcggtgcaggcgcagatcgaccacttggcgccccaggaccgggct
cggctctcggggctgcacgccgtcaccctgcatcggttgctcggtcggtcgtggaagaac
tccggcaggttcgtccacaaccgggccaaccggttgccctacgacgtcatcgtggtcgac
gagacgtcgatggtaccgctgaccatgatggcgcggttgctcgaatcggtccgtccggca
acacgattgatcctggtgggcgatccggaccagttggcctcggtggaggcgggggcggtg
ctggccgacctggtggacggtctgggtgcgcgccgtgacctgcaggtggcggcgttacgc
acgtcgcaccggttcggcgagtccatcggcgctctggccggcgcggtgcgccgcggcgac
ggcgacgaggtactcacgctgctgcgctcgggaaacgaacacatcgagttcatcgaggag
cgttcggcgcagctgcgcgacatcctggtgagccacgccctgcaggtgcgcgcggcggca
ctgcgcggcgatgccggggacgcgttggcggcgttggagtcccaccgattgctctgcgcg
caccgggagggtccacacggggtgcggcactggaatcggcagatcgagcggtggctcgcg
gaggagaccggcgagggccgctgggccgactggtacgccggccggccggtcctcgtgacc
gagaacgactacgggctggggctgtacaacggtgacaccggcgtgacggtgcgggccggt
gatcaactgcgggtggcactcgggggtgcaggcgcagtggtggagttcgcaaccagccgc
ctggcccatgtcgagaccatgcacgcgctgaccatccacaagagccagggcagccaggcc
gacgacgtgaccgtgctgctgccgtcggaggactcgcggctgctgacgcgcgagctgttc
tacaccgcgatcacccgcgccaccacgcgggttcgggtggtgggtaccgaggcgggcgtg
cgggcggcactcgcccggcgggtggtgcgggcgacgggtctgcggcaacggctggcgcag
tag
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