Mycolicibacterium tokaiense: MTOK_27410
Help
Entry
MTOK_27410 CDS
T06987
Symbol
ligD_2
Name
(GenBank) multifunctional non-homologous end joining protein LigD
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
mty
Mycolicibacterium tokaiense
Pathway
mty03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
mty00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
MTOK_27410 (ligD_2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mty03400
]
MTOK_27410 (ligD_2)
Enzymes [BR:
mty01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
MTOK_27410 (ligD_2)
DNA repair and recombination proteins [BR:
mty03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
MTOK_27410 (ligD_2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
BBY86959
LinkDB
All DBs
Position
2818133..2820400
Genome browser
AA seq
755 aa
AA seq
DB search
MERLGRVRLTNADKVLYPETGTTKGEVFDYYVAIAEVMVPHTAGRATTRKRWPNGVAEPA
FFEKQLASSAPDWLTRASVKHGSGTITYPIIDSQESLAWIAQQASLEVHVPQWRFDSGII
GPATRLVFDLDPGDDVPMSQLCEVARAVRDLMDDVGLTVYPLTSGSKGLHLYARFDEPVS
SRGAVVLAKRVAQQLEQAMPKKVTSTMTKSLRTGKVFVDWSQNSASKTTIAPYSLRGRER
PTVAAPRTWEELDAPDALEHLTYAEVLARVARDGDLLAALDPDAPVSDKLSTYRSMRDAG
KTPEPVPSSRPALGHDNTFVIQEHHARRLHYDFRLERGGVLVSWAVPKNLPDTPSVNHLA
VHTEDHPLEYATFEGEIPKGEYGGGKVIVWDSGSYEAEKFRDPGVDGESVDGKKGEVIVT
LHGTRITGRYALIQTGGKNWIAHRMKEQDQPGVGDFAPMLATHGSVERLKSGPWAFEGKW
DGYRMLVEVDHGDLRLRSRSGRDVTAEFPQLRSLAADLADHHVVLDGEVVALDSNGVPSF
GEMQNRARSTRVEFWAFDLLVLDGRSLVRAKYSDRRRLLEAFADGTDLIVPEQIPGDGPQ
ALEYAREQRWEGVVAKKRDSTYQPGRRSASWIKDKLWNTQEVVIGGWRQGEGGRSSGIGA
LLMGVPGDGGLEFVGRVGTGFTDKELAKLKTLLTPVDESPFNATLVGPDARGVTYVEPVH
VGEVRYSERTSDGRLRQPSWRGLRPDKSPDEVVWE
NT seq
2268 nt
NT seq
+upstream
nt +downstream
nt
atggagcgcctgggacgggtccggctgaccaacgccgacaaggtgctctatccggagacc
ggaaccaccaagggtgaggtcttcgactactacgtggcgatcgccgaggtgatggtgccg
cacaccgcgggccgggccaccacccgcaaacgctggcccaacggggtcgcggagccggcg
ttcttcgagaagcagttggcctcctcggcgccggactggttgacgcgggcctcggtgaag
cacggctcggggaccatcacctacccgatcatcgacagtcaggagtcactcgcctggatc
gcgcagcaggcgtcgttggaagtgcatgtgccgcaatggcgttttgattcagggatcatc
ggcccggccacccggctggtgttcgacctggaccccggcgacgacgtgccgatgagccag
ctctgtgaggtcgcccgcgcggtacgtgacctgatggacgacgtgggcctgacggtgtac
ccgttgaccagtggcagcaagggactgcacctctatgctcgcttcgacgagccggtgagc
tcccgcggcgccgtcgtgctcgccaaacgtgttgcgcagcaattggagcaggccatgccg
aagaaggtgacctcgacgatgaccaagagcctgcgcaccggcaaggtgttcgtggactgg
agccagaacagtgcgtcgaagaccaccatcgccccctattcgctgcggggccgcgagcga
ccgacggtcgccgcgccgcgcacctgggaggaattggacgccccggatgcgctggagcac
ctgacctatgccgaggtgctggcgagggtggcgcgcgacggggacctgctggcggcactg
gatcccgacgcgccggtgtccgacaagttgagcacctaccgcagcatgcgtgacgcgggc
aagacgccggaaccggtgccctcgtccagacctgctctgggccacgacaatacattcgtc
atccaggaacaccatgcgcgccgtctgcactacgacttccggttggaacgcggcggcgtg
ctggtctcctgggccgtgcccaagaatctccccgacacgccgtcggtgaaccacctggcc
gtgcacaccgaggatcacccgctcgagtacgccaccttcgaaggggagatccccaagggc
gagtacggcggtgggaaggtgatcgtctgggactccgggagctacgaggcggagaagttc
cgcgatcccggggtggacggcgagtcagtggacggcaagaagggcgaggtgatcgtcacc
ctgcacggcacccggatcaccggccgctacgcactgatccagaccgggggcaagaactgg
atcgcgcaccggatgaaggagcaggaccagcccggggtcggcgattttgcacccatgctc
gccacccacggttcagtggagcggctgaagtccggcccctgggcgttcgagggcaagtgg
gacggttatcgaatgctggtggaggttgaccacggtgacctgagactgcgttcgcgcagc
ggccgcgacgtcaccgcggagtttccgcaactacgttcgctggcagccgatctggctgat
caccacgtggttctcgacggcgaggtggtggctctggactccaacggggtgcccagcttc
ggggagatgcagaaccgcgcccgctccacccgggtcgaattctgggccttcgatctgttg
gtgctggacggccgatccctggtgcgcgccaagtactccgaccgccgccggttgctggag
gcctttgccgacggaaccgatctcattgtccccgaacagattcccggcgatggtccgcag
gccttggagtacgcgcgcgagcagcggtgggagggggtggtggccaagaagcgtgactcc
acctatcagccggggcggcgctctgcgtcgtggatcaaggacaagctgtggaacacccag
gaggtggtgatcggcggctggcgccaaggcgaaggcgggcgctccagcggcatcggcgcc
ctgctgatgggcgttccgggcgacggcggcctggagttcgtcgggcgggtgggcaccggt
ttcaccgacaaggagctggccaagctgaagacgttgctgacccccgtcgacgaatcaccc
ttcaatgcaacccttgtcggccctgatgcccgcggggtcacgtatgtggaaccggtgcac
gtgggcgaggtgcgttacagcgagcggacttccgacggccgtctgcggcagccgagttgg
cggggcctgcggccggacaagtcgccggacgaggtggtgtgggagtaa
DBGET
integrated database retrieval system
