Mucilaginibacter celer: HYN43_006135
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Entry
HYN43_006135 CDS
T05668
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
muh
Mucilaginibacter celer
Pathway
muh03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
muh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
HYN43_006135 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
muh03400
]
HYN43_006135 (ligD)
Enzymes [BR:
muh01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
HYN43_006135 (ligD)
DNA repair and recombination proteins [BR:
muh03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
HYN43_006135 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
mRNA_cap_enzyme
DNA_primase_S
KAsynt_C_assoc
Motif
Other DBs
NCBI-ProteinID:
AYL94902
UniProt:
A0A494VV85
LinkDB
All DBs
Position
1529486..1532212
Genome browser
AA seq
908 aa
AA seq
DB search
MSLEKYVEKRDFSKTKEPKAGRSKDKNHLMFVIQKHDASRLHYDFRLEMDGVLKSWAIPK
GPSTDPKTKRLAMMVEDHPFDYRNFEGIIPEGEYGGGTVIVWDEGTYEPIEAIKGKKAQE
KHLLKQLESGSLKIKLHGEKLEGEYALVKTHGMGENGWLLIKHNDEFASEKDITKKDKSV
LSGKTIQKMEKTSEKVWQHGHEEDVEKPAKSTNKKKEATEPVKKIAEKIDTDKPESFDVD
ALLKKAPKSKLPQNIKPMKATLVDEPFDDPDWLYEVKWDGYRAIAIIDDKGSAELVSRNN
LPFDKYYPINKLLKAWKINAVIDGEIVVLNDKGISDFGALQNWRSEADGNLVYYVFDILW
YDGKNLMDLPLEQRQAILKKILPQTHDQIRQSEAFKANGIEFFNAAERIGLEGIIAKKAN
SVYTSDLRSKEWLKIKVHRRQEVVVAGFTKNAGTSKAFSALVLGVYDDKGKLQYAGKVGT
GFSDKLQKEMMAQFKPLITDKSPFEVEPDVDKPSRFRPQRLGAKPTWLKPQLVAEVAFAE
VTGDGVFRQASFKGMRTDKKATDVVLETPKDTAETVTEADGKDVHTKTIKPVKDTDRKTL
LNPNDETQVRKICGHELKFTHLSKVYWPEDNVTKRDMFNYYYQVADYILPYLKDRPMSLN
RYPNGIHGSSFYQKDVKGKAPEWVTKTFPYTNGEGEHKEYLVGSDESYLLWMASLGCIEM
NPWFSRVQSPDNPDYCVIDLDPDKNTFDQVIEAALEVKKVLDAIDVPACCKTSGSTGMHI
YIPLAAKYDYDQSQMFARLIVNIVHKQIPDYTSLERMIANRKGKMYLDFLQNRPGATIAG
PYSLRPKPGATVSMPLHWDEVKPGLTMKDFTIFNSIDRLKETGDLFKDVLGKGINLEEVI
KKAKRVFE
NT seq
2727 nt
NT seq
+upstream
nt +downstream
nt
atgagcctggaaaagtatgtagagaagcgcgatttcagcaaaactaaagagcccaaagca
ggcaggagcaaggataaaaatcacctgatgtttgttatccaaaaacacgatgcctcaagg
ctacattacgatttcaggctggagatggatggcgtacttaaaagctgggctatccccaaa
ggcccctccaccgatcccaaaaccaagcgcctggccatgatggttgaggatcatcccttt
gattaccgcaactttgagggcattatacccgaaggggaatacggcggcggtactgtgata
gtttgggatgaaggcacttacgagcctatcgaggcaattaaaggaaaaaaggcacaggaa
aaacacctgctgaaacaacttgaatcaggctcgctcaaaataaaacttcacggcgaaaag
ctggagggagaatacgccctggttaaaacccacggcatgggcgaaaacggctggttgctg
ataaagcataacgacgagtttgcatctgaaaaagacatcaccaaaaaagataaatctgta
ctatcgggcaaaaccatccaaaaaatggaaaaaaccagcgaaaaggtttggcagcatggc
cacgaggaggatgtagaaaagccagcgaaatcaacaaataaaaaaaaagaagcaactgaa
ccggttaaaaaaatagctgaaaaaattgacacggataagccggaaagctttgatgttgac
gccttgctaaagaaggcacccaaatcaaaacttccccaaaatatcaaaccgatgaaggct
accctggttgatgaaccttttgacgacccggactggctttatgaagtgaaatgggatggt
taccgcgctattgccattattgatgataaaggcagtgccgaactcgtttcccgcaataac
ctcccttttgataaatattatcccatcaataaactactcaaagcctggaaaattaatgcg
gttattgacggcgagatcgtggtgttgaacgataagggcatatccgattttggtgccctg
caaaactggcgaagcgaggctgatggtaacctggtttactatgttttcgatatcctttgg
tacgacggaaaaaacctgatggacctaccgcttgaacaacgccaggctatcctgaaaaaa
atattaccccaaactcacgatcagattcgtcaaagcgaggcttttaaggccaacggtatc
gagtttttcaatgcggccgaaaggatagggctggagggcattatcgccaaaaaagccaat
agtgtttatacttctgatctgcgctcaaaagaatggcttaaaattaaggttcatcgccgg
caggaggtggttgttgccggctttactaaaaatgccggaacctcaaaggcttttagtgcg
ttggtattgggtgtttatgatgataaaggtaaactacagtatgccggcaaagtgggcaca
ggtttttcagataaactgcaaaaggaaatgatggcgcagtttaagccgcttattactgat
aaaagcccttttgaggttgagccggacgtagataagccatcgcgtttcaggccgcagcgc
ttaggggcgaagccaacctggcttaagccccaattggttgccgaagttgcatttgccgaa
gtaaccggcgatggggtattcaggcaggcttcgtttaaaggcatgcgaacagataaaaaa
gcaacagacgttgtgcttgaaaccccaaaagataccgccgaaactgtaacggaggccgat
ggaaaggatgttcacaccaaaactattaagcccgtgaaagataccgaccgcaaaacacta
ctcaaccccaacgacgaaacgcaggtacgcaaaatttgcgggcatgagctgaagtttacc
cacctgagtaaagtgtattggcccgaagataatgtaacgaagcgcgatatgtttaattac
tactaccaggtagccgattatattttgccttatctgaaagacaggcccatgtcgcttaat
cggtaccccaatggcattcatggttcaagcttttatcaaaaagatgtgaaaggtaaagcg
cccgaatgggttacaaaaacttttccgtataccaacggcgaaggcgaacataaggaatac
ctggttggttcggacgaatcatatctgctttggatggcatcgctgggttgcattgaaatg
aacccatggtttagccgcgtgcagtcgccggataacccggattattgcgtgatagacctc
gatccggataaaaacactttcgaccaggtgattgaggccgcactggaagtaaaaaaagta
ttggatgctatcgatgttccggcatgctgtaaaacatcgggttctaccgggatgcatatc
tatatcccattagcggctaagtatgattacgatcaatcgcaaatgtttgcaaggctgatt
gtgaatatcgtacataaacagatccctgattataccagcctggaacggatgatagctaac
agaaaaggtaaaatgtatctcgattttctgcagaaccgtccgggtgccactatcgccgga
ccatattcgctaaggccgaagccaggcgctaccgtctcgatgccgctgcactgggatgag
gtaaaaccgggccttaccatgaaggattttaccattttcaattctattgatcgccttaag
gaaacaggcgacttgtttaaagatgttttaggtaaagggattaacttggaggaggttatt
aagaaggcgaagagggtgtttgaataa
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