Mucilaginibacter celer: HYN43_023545
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Entry
HYN43_023545 CDS
T05668
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
muh
Mucilaginibacter celer
Pathway
muh03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
muh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HYN43_023545 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
muh03400
]
HYN43_023545 (mfd)
Enzymes [BR:
muh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HYN43_023545 (mfd)
DNA repair and recombination proteins [BR:
muh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
HYN43_023545 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
RecG_dom3_C
DUF3638
Motif
Other DBs
NCBI-ProteinID:
AYL99562
UniProt:
A0A494W898
LinkDB
All DBs
Position
complement(5701747..5705094)
Genome browser
AA seq
1115 aa
AA seq
DB search
MNIRDILDRYKADDRIKALATALNASKNPRVQLRGLVGSSDSAMAVALYFLQHKHMVFVL
PDREEAGFFQADLENLTGKEALLFPSSYRKPFEFTQPDSSNVLARAEVLNELNHSTEYGQ
LIVTYPEALAEKVIDRAALEKNTLEIAVENKLSIDFINEFLIEYDFERVDFVYEPGQFSI
RGGIVDIFSFSHTLPYRVEFFGDYIESIRTFEIESQLSAERVKSITIVPNVQSKFLTENN
ISLLEYVEPGTQVWIKDVQFTLDIIQTGYKKAVNLWKALSADEKTQNPDWIDPKFGFTDE
KLIGDQLHDFPVVEFGKQFFYNDATVINFDMRPQPSFNKDFTLLIHNFKNNEADKIENFI
LTDSAKQVERLYAILDDLDKTVKFTPISISVREGFIDQEQKLACYTDHQIFDRYYKYKTR
KGYQRSQAITLKELRDLKPGDFVTHIDHGIGKYAGLEKVDVNGKQQEMIRLIYADNDLLY
VNINSLNRISKFSGKEGTVPKMNKLGTDTWERLKKTTKKKVKDIARDLIKLYALRKAQHG
NAFSPDSYLQTELEASFLYEDTPDQEKATADFKKDMESPHPMDRLICGDVGFGKTEVAVR
AAFKAVADSKQVAILVPTTILAAQHYKTFTDRLKGFPANIDYVNRFKSSRQIKDTLEKLK
EGKVDIIIGTHRLVSKDVKFKDLGLMIIDEEQKFGVSTKEKLKQMRANVDTLTLTATPIP
RTLHFSLMGARDLSIISTPPPNRQPVVTELHVFNDKLIKEAVEFEIDRGGQIFFIHNRVA
DLPQLGGMIRKLVPKARIGIAHGQLEGDDLEDVMLKFVNHEYDVLVATTIIEAGLDIPNA
NTIIINYAHMFGLSDLHQMRGRVGRSNKKAYCYLLSPPLSTLTSEARKRLSAIEEFSDLG
SGFNVAMRDLDIRGSGNLLGAEQSGFIAEIGFEMYHKILDEAIQELKDDEFKDVFPEDKP
RPYISFTQIDTDLEILIPDEYVTNISERYNLYTELSKLENEVELKAFQQKLHDRFGPVPP
QVNSLLNTMRLQWLGKAIGFEKISLKKNVLRGYFITNQQSSYFETEAFRNVLNFVKENPR
RTNLKEVKNTLRLGIEGVDSVDEAVRLLSEVAGIG
NT seq
3348 nt
NT seq
+upstream
nt +downstream
nt
ttgaatatccgcgatatattagacagatacaaagctgatgaccggatcaaagcgttggcc
accgcgctcaacgcctcaaaaaatccaagggttcagctccgtggtttggtgggatcgagc
gattcggccatggcggtagctttgtactttttgcagcacaaacacatggtgttcgtactg
cccgaccgcgaggaagccggctttttccaggccgacctggaaaaccttaccggcaaagaa
gccctgcttttcccctcatcctaccgcaagccatttgagtttacccagcccgacagcagc
aacgtacttgcccgcgctgaggtactgaacgagcttaaccacagcaccgaatacggccag
ctgatagttacctaccccgaagctttggccgaaaaggtgattgaccgcgccgcgctcgaa
aaaaacaccctcgaaattgctgttgaaaataaactgagcatcgatttcatcaacgagttt
ttaattgaatacgattttgaacgtgttgattttgtgtatgaaccgggccaattctctatc
cgtggaggtattgttgatatattctcgttttcgcatacgctgccctacagggttgagttt
tttggcgattatatcgagtcgatccgcacgttcgagattgagagccagctttcggccgag
cgggtcaaaagcatcaccattgtacccaatgtacaatccaagtttttaaccgagaacaat
atctcgttattagaatatgttgagcctggcacccaggtatggataaaagatgtgcagttt
acactggatattatccaaacaggctacaaaaaagccgttaacctgtggaaagccctctct
gccgatgaaaaaacgcaaaacccggattggatagaccctaaattcggctttactgatgag
aagttaattggcgatcagctgcatgattttccggtggtggagtttggcaagcagtttttt
tataacgatgctacggttattaattttgatatgcggccgcagccatcgttcaataaagat
tttacgctgctgatccacaactttaaaaataatgaagccgataagatcgagaattttatc
cttacggattcggctaaacaggttgagcgtttatatgctatcctggatgatctggataag
accgtaaagtttacaccgatcagcatttcggtacgcgaaggttttattgatcaggaacaa
aaactggcctgctataccgatcaccagatttttgaccgttactataaatacaaaacccgc
aaaggctaccagcgctcgcaggccatcaccctgaaagaactgcgcgaccttaaacccggc
gattttgtaactcatattgaccatggtattggcaaatacgcaggcctggaaaaggttgat
gtaaacggcaagcaacaggaaatgatccgcttgatttatgctgataacgacctgctgtac
gtaaacatcaactcgcttaaccgcatctctaaattcagcggcaaagagggtaccgttcct
aaaatgaacaaactgggtaccgatacctgggaacgcctcaaaaaaaccacaaaaaaaaaa
gttaaggacatagcccgcgatctgattaagctttacgcactgcgtaaggcccagcacggc
aatgccttctcgcccgatagttacctgcaaaccgaactggaagcatccttcctgtacgag
gataccccggaccaggaaaaagccacagccgatttcaaaaaagacatggaatcgccccac
cctatggaccgcctcatttgcggcgacgtaggtttcggcaaaaccgaagtagccgtgcgc
gcggcgttcaaagccgttgccgatagcaagcaggtggccattctggttccaacaaccatt
ttagcggcccagcactacaaaacttttaccgacaggctgaaaggattcccggccaatatt
gattacgtaaaccgttttaaatcgagcaggcagattaaggatactttagaaaaactgaaa
gaaggcaaagttgatatcatcatcggcacccatcgtttggtaagtaaggatgtgaagttt
aaagaccttggtttgatgatcattgacgaagagcaaaagttcggcgtatcaaccaaagag
aaattgaaacaaatgcgcgccaatgtggatacgcttacgctaacggccacgcctattccg
cgtacactgcacttctcattaatgggcgcgcgcgacctatctatcatatcaacgccaccg
ccaaaccgccagccggtagttaccgagttgcatgtgtttaatgataagctgattaaggaa
gccgttgagtttgaaattgaccgcggcgggcagatcttctttattcataaccgcgtggcc
gatctgcctcagttaggcggcatgatccgtaagctggttcctaaagcccgcataggtatt
gcccacggtcagctggaaggtgacgacctggaagatgtgatgctgaagtttgtgaaccac
gagtatgatgtgctggtggccacaaccattattgaggccggtttggatatccctaacgcc
aataccatcatcattaactacgcccacatgtttggcctcagcgatttgcaccagatgcgt
ggccgcgtgggcaggagcaataaaaaagcttattgttatttgctgagccctccgttatca
accttaaccagcgaagcccgcaaacgactcagcgccattgaagagtttagcgatctgggc
agcggctttaacgtagccatgcgcgatctggacattcgcggcagcggaaacctgttgggt
gccgaacaaagcggtttcattgccgagattggcttcgaaatgtaccacaagatcttggac
gaggcaatacaagagctgaaagatgatgagtttaaagatgtatttcccgaggataaaccg
cggccatacatttccttcacccaaattgataccgacctggagatcctgattccggatgag
tatgtaaccaatatttctgaacgctacaacctgtacaccgaactttcaaaactggaaaac
gaggttgaactgaaagcctttcaacaaaaattgcatgacaggtttggccccgtgccgccg
caggtgaacagcctgcttaataccatgcgcctgcaatggctgggcaaggctatcggtttt
gaaaagatctcgcttaagaaaaatgtgttgcgtgggtattttatcaccaatcagcaatca
agttattttgaaactgaggcttttcgaaatgtgcttaattttgtgaaggaaaacccaagg
cgaactaatttgaaggaggtgaagaatacgctacgtttagggattgagggagttgatagt
gtggatgaggcggtgaggttattgagtgaggtggcggggatagggtaa
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