Mesitornis unicolor (brown roatelo): 104533783
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Entry
104533783 CDS
T08455
Symbol
UPF1
Name
(RefSeq) regulator of nonsense transcripts 1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
mui
Mesitornis unicolor (brown roatelo)
Pathway
mui03013
Nucleocytoplasmic transport
mui03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
mui00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
104533783 (UPF1)
03015 mRNA surveillance pathway
104533783 (UPF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mui03019
]
104533783 (UPF1)
Enzymes [BR:
mui01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
104533783 (UPF1)
5.6.2.5 RNA 5'-3' helicase
104533783 (UPF1)
Messenger RNA biogenesis [BR:
mui03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
104533783 (UPF1)
mRNA cycle factors
Common to processing body (P body) and stress granule
104533783 (UPF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
ATPase
nSTAND3
DEAD
Helicase_RecD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
104533783
NCBI-ProteinID:
XP_010178743
LinkDB
All DBs
Position
Unknown
AA seq
1042 aa
AA seq
DB search
VNGPDGILQNGAVDDNVAKTSQLLAELNFEEDEEDTYYTKDLPVHACSYCGIHDPACVVY
CNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGCRNVFLLGF
IPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQ
ITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADY
DKKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSDMRLMQGDEICLRYKGDLAPLWKG
IGHVIKVPDNYGDEIAIELRSSVGAPVEVTHNFQVDFVWKSTSFDRMQSALKTFAVDETS
VSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGT
GKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCAKSREAIDSPV
SFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICCT
CVGAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAA
KAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRVKKGFD
FQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTKLLKAGAKPDQIGIITPY
EGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDP
RRLNVALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRESLMQFSKP
RKLVNTINPGARFMTTAMYDAREAIIPGSVYDRSSQGRPSNMYFQTHDQIGMISAGPSHV
TAMNIPIPFNLVMPPMPPPGYFGQANGPAAGRGAPKGKTGRGGRQKNRFGIPGTSQSNLP
SSQASQDVVSQPFSQGPLTQGYISMSQPSQMSQPGLSQPELSQDSYLGDEFKSQIDVALS
QDSTYQGERAYQHGGVTGLSQY
NT seq
3129 nt
NT seq
+upstream
nt +downstream
nt
gttaacggacctgatggcattctgcagaatggagctgtggatgataacgtggctaaaacc
agccagcttctggcagagctgaattttgaagaagatgaagaagatacctattacaccaag
gatcttcctgtgcatgcttgcagttactgtggtatccatgaccctgcttgtgtggtttac
tgtaacaccagcaagaagtggttctgtaatgggcgtggaaatacatctggcagccacatt
gttaatcatcttgtgagagcgaagtgcaaagaggtgactctccataaagatggacctcta
ggagagactgtcctggaatgttataactgtggatgtcgtaatgtgtttctccttggcttt
attccagccaaggcagactctgtggttgttttgctctgcaggcagccatgtgccagtcag
agcagtttaaaggacattaattgggacagttcacagtggcagcctcttatccaagatcgc
tgtttcctgtcgtggctggtaaagattccgtctgagcaggagcagttgagagctcgtcag
attacagctcagcagattaacaaactggaagaactgtggaaggaaaatccatctgcaacc
cttgaggacttagaaaagcctggtgttgatgaagaaccacagcatgtcctgcttagatat
gaagatgcttatcaataccaaaatatatttggtcctctggtcaagcttgaggcagactat
gataagaaactcaaggagtctcagactcaagataacatcacagtcagatgggacctgggc
ttgaacaagaaaagaattgcttacttcactttgccaaagactgattcagatatgcgtctg
atgcaaggagatgagatctgcctgaggtataaaggggacctggcccctttatggaaagga
attggtcatgttatcaaagttcctgataattatggtgatgagatagccattgagctgagg
agcagcgttggagcgcctgtggaagttactcacaacttccaagtggattttgtctggaag
tcgacttcatttgacagaatgcagagtgctttaaaaacatttgctgtggatgagacttcg
gtgtctgggtacatctatcacaaactgttaggtcatgaggtagaagatgtcattattaaa
tgccagttgccaaagcgctttacagcacaaggacttcctgatctcaaccattctcaggtt
tatgctgtgaagactgtcctgcagcgtcctctgagccttattcagggtcctcctggtact
ggaaaaacagtgacatcagccacaatcgtctatcacctggctagacagggcaatgggccc
gtgttagtctgtgctccaagtaatatagctgtggatcagctgactgagaagatccatcaa
actggactgaaagtggttcgtctgtgtgctaaaagtcgtgaggcaattgactctcccgtg
tccttcttggcactgcataaccagatcagaaacatggatagcatgccagagcttcagaag
ctgcagcagcttaaagatgaaactggagaactctcatctgctgatgagaaacgttaccgt
gcactgaaacgaacagcggaacgtgaattgcttatgaatgcagatgtgatctgttgcacg
tgtgttggagctggtgatccaagacttgcaaaaatgcagttccgctccattctgattgat
gaaagcacacaggctactgagccagaatgcatggtgccagttgtcctgggagcaaaacag
ctgattcttgtaggtgaccactgccagcttggtcctgttgtgatgtgtaaaaaagcagca
aaggctggcctgtcccagtccctctttgagagacttgtggtgctggggattcgtccaatt
cgccttcaagtgcagtatcgcatgcaccctgcgctcagtgctttcccatccaacatcttc
tatgagggttcactccagaatggtgttactgcagcggaccgcgtgaaaaaaggttttgat
ttccagtggccacagccagataagccaatgtttttctatgttacacaaggacaagaagaa
atcgccagctcaggcacctcttacttgaacaggacggaagctgccaatgtggagaagata
actacaaagctattgaaagctggtgccaaaccagatcagattggcattattactccttat
gaaggtcaacgatcctatctggtgcagtacatgcagttcagtggttccttgcatacaaag
ctctaccaggaagtggaaattgcaagtgtggatgccttccagggacgagagaaggacttt
attatactttcttgtgtgagggccaatgaacaccaaggaatagggtttctgaatgacccc
aggcgtcttaatgtagctcttacaagagccaggtatggagtcattattgttgggaacccc
aaagcgctgtctaaacaaccactttggaatcacctgctgaattactacaaggagcagaag
gttctggtggagggaccactgaacaacctccgggagagcctcatgcagttcagcaagccc
cggaaacttgtcaataccatcaacccaggggcccgtttcatgactactgccatgtacgat
gcacgtgaggccattattccaggatctgtctatgaccggagcagtcaagggcgcccatcc
aacatgtacttccaaacccatgaccagatcgggatgatcagtgctggtcccagccacgtc
accgctatgaacattcctatccccttcaacctcgtgatgccaccgatgccaccaccggga
tactttggccaggccaatggaccagccgcaggacgtggggcgccaaaaggaaagactggt
cgtggtgggcgccagaaaaatcgctttgggattcctggaaccagtcagtcaaaccttcca
agtagtcaggcgagccaagatgtggtgtcccagcctttctctcagggtccactgactcag
gggtatatctccatgagtcagccatcgcagatgagtcagcctgggctctcccaaccagaa
ttatcacaggacagttaccttggtgatgagtttaagtctcagattgacgtggcgctgtca
caggactctacttaccagggtgaacgtgcatatcaacatggcggagtgacgggactgtca
cagtattag
DBGET
integrated database retrieval system
