Mycobacterium ulcerans: MUL_4434
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Entry
MUL_4434 CDS
T00435
Name
(GenBank) ATP dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
mul
Mycobacterium ulcerans
Pathway
mul03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
mul00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
MUL_4434
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mul03400
]
MUL_4434
Enzymes [BR:
mul01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
MUL_4434
DNA repair and recombination proteins [BR:
mul03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
MUL_4434
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
RNA_ligase
DUF6866_C
Motif
Other DBs
NCBI-ProteinID:
ABL06417
Pasteur:
MUL_4434
UniProt:
A0PVP8
LinkDB
All DBs
Position
complement(4917308..4919620)
Genome browser
AA seq
770 aa
AA seq
DB search
MGSAQAWPPGQANGPQVTLTNADKVLYPATGTTKSDVFGYYTGIAEVMIPHIAGRPATRK
RWPNGVDQASFFEKQLASSAPDWLPRASVVHRSGTTTYPIIDSATGLAWIAQQAALEVHV
PQWRFVAEWTSKGEILTPGPATRLVFDLDPGEGVTMAQLAQVARAVRDLLADIGLSTLPL
TSGSKGLHFYTPLDEPVSSKGATVLAKRVAQQLETVMPALVTATMTKSLRAGKVFLDWSQ
NSGSKTTIAPYSLRGREQPTVAAPRSWEELDDPGLRQLTYDEVLARLTRDGDLIAALDAD
LPGDDRLLKYRSMRNASKTPEPVPRARPVVGQGNTFVIQEHHARRLHDDFRLERDGVLVS
WAVPKNLPETTSVNHLAVHTEDHPLEYATFEGNIPKGEYGAGKVIIWDSGTYDTEKFRDD
SRNGAEKGEVIVNLHGSRISGRYALIQTNGDQWLAHRMKDQTAFDFDTLAPMLTSHGSVA
GLESGQWAFEGKWDGYRLLVEADHGALRLRSRSGRDVTTEYPQLRSLAADLADHHVVLDG
ELVALDSSGVPSFNEMQNRVRATRIEFWAFDLLFLDGRSLLRARYRDRRKLLETLGSAGN
LIVPELLPGDGAEALAYSHKRGWEGVIAKRRDSGYQPGRRSSAWIKDKHWNTQEVVIGGW
RVGEGGRSSGIGSLLMGIPGPSGLHFAGRVGTGFTERDLANLKKTLAPLHTDESPFDAAL
PAREAKGVTFVVPTLVGEVRYSEWTPDDRLRQSSWRGLRPDKNPSEVVRE
NT seq
2313 nt
NT seq
+upstream
nt +downstream
nt
atgggttcggcgcaggcctggcctcctggacaggcgaatggtccgcaggtgacgctgacc
aacgcggacaaggtgctgtacccggctaccggaaccaccaagtctgacgtcttcggttac
tacaccggcatcgccgaggtgatgatcccgcatatcgccgggcgcccggcgactcgcaag
cgctggcccaacggcgtcgatcaggcgtcctttttcgaaaagcagctggcgtcgtcggcg
ccggactggctgccgcgtgccagcgtggtgcaccggtcgggaacgacgacctatccgatc
atcgacagcgccaccgggctggcctggatcgcacaacaggccgccctcgaggtgcacgtc
ccgcagtggcggttcgttgccgagtggacgtccaaaggcgaaatcctcacgcccgggccg
gccacccgattggtgttcgacctggacccgggcgagggcgtgacgatggcccaactcgcg
caggtggcgcgggcggtgcgcgatctgctcgccgacatcggcctgagtaccctcccgctc
accagcggtagcaagggcctgcacttctacaccccgctcgacgagccggtgagcagcaag
ggcgccacggtgttggccaaacgggtcgcgcagcaactggaaacggtgatgccggcgttg
gtcaccgcgaccatgaccaagagtctgcgggccgggaaagtgttcctggactggagccaa
aacagcggatcgaagaccaccatcgcgccgtattcgctgcgtgggcgcgaacaaccgacc
gtcgccgcaccacgcagctgggaggagctcgacgacccggggctgcgccagctgacctac
gacgaggtgcttgcccgcctcacccgcgatggcgatctgattgcggcgctggacgcggac
ctccccggcgacgaccggctgctcaaatatcgcagcatgcgcaacgcgtcgaaaacgccg
gagccggtgccccgagccagacccgttgtcgggcagggtaataccttcgtgatccaagag
catcacgcgcgccgtctgcatgacgacttcaggctggagcgtgatggggtactggtgtca
tgggcggtgccgaaaaacctgccggaaaccacgtcggtgaaccacctggccgtgcacacc
gaagatcatccgctggaatacgcgacgttcgagggcaacatcccgaaaggggagtacggc
gccggcaaggtgatcatctgggattccggcacctatgacaccgagaagttccgcgacgac
tcgagaaacggtgcggaaaagggggaggtgattgtcaacctgcacggcagtcgaatctcg
gggcggtacgcgctgattcagaccaacggggaccaatggctggcgcatcgcatgaaggac
cagacggccttcgatttcgacaccctcgcgcccatgctcacctcccacggttcggtggca
ggtctcgagtcgggtcagtgggcgttcgaaggcaagtgggacggctaccggctgctggtc
gaagccgaccatggcgcgctgcgactgcgctcccgcagcggacgtgacgtcaccacggaa
tacccccaattacgttcattggccgccgatctcgctgatcaccacgtggtgctcgacggt
gaattggtggccctcgactcctccggagtgcccagcttcaacgagatgcagaaccgggtg
cgcgccacccgcatcgagttctgggcgttcgacttgctctttctggacggtcgctcgcta
ctgcgggccagataccgcgaccggcgcaagctactggaaaccctgggcagtgcgggcaat
ctgatcgttccggagttgttgcccggtgacggcgccgaggcgctggcctactcgcacaag
cgcggttgggagggagtcattgccaagcgccgcgactccggctatcaacccgggcggcgc
tcgtcggcgtggatcaaggacaagcactggaacacccaggaagtcgtcatcggcggttgg
cgagttggggagggtgggcgcagcagcgggattggatcgttgctcatgggcattcccggc
ccgagcggtttgcacttcgccggccgtgttggaaccggcttcaccgaacgtgacctggcc
aacctcaagaagacgctggcgccgctgcataccgacgaatccccattcgacgctgcgctt
ccggcgcgcgaggccaagggtgttacgttcgtcgtgccgacgctggtcggggaggtgcgc
tatagcgagtggacccccgatgaccgattgcggcaatccagctggcgtgggttgcgcccg
gacaaaaacccgagtgaggtggtgcgcgaatga
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