Pseudoduganella umbonata: FCL38_02710
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Entry
FCL38_02710 CDS
T06138
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
mum
Pseudoduganella umbonata
Pathway
mum03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
mum00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
FCL38_02710 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mum03400
]
FCL38_02710 (ligD)
Enzymes [BR:
mum01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
FCL38_02710 (ligD)
DNA repair and recombination proteins [BR:
mum03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
FCL38_02710 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
HC2
Motif
Other DBs
NCBI-ProteinID:
QCP09449
LinkDB
All DBs
Position
650604..653408
Genome browser
AA seq
934 aa
AA seq
DB search
MAMTDALKLYKAKRNFAITPEPAEGGQEGQEALTFVIQKHWASRLHYDFRLELDGTMKSW
AVPKGPSYDSHDKRMAVHVEDHPISYNDFEGVIPEKQYGAGKVIIWDKGTWHPVGDPRKG
YRDGNLKFELRGHKLRGRWVLVRMRRSGEKQEPWLLIKENDEYVRPASEFSVIDEMPDSV
KALGMPTDEQLTPEAEEAESIAEQHQGKPARKAAARKGPAAKSAATKSAAAKSGATKAAA
TKAAATKATATKATATTPAARKAPAKGKGKATDTGDPLAKVPLPATLSPELATLVDSPPG
DPENWIFELKFDGYRLLARVEGKSIELWTRNGNDWTHKLEPLRAALEKLQLPDGWYDGEI
VVHDANGRPNFGLLQQAFDGEKTKKIVYFVFDAPYLDGHDLRDVPLAQRRELLRTVLGDD
ETGQVRFSAELAAPPEEIVAAACRMGLEGIIGKRRDALYTSRRSGDWIKLKCAQRQEFVI
GGYTDPKGSRVGIGSLLLGYYDDEGKLHYAGNVGAGFNDTSLRDIIARLKKVASDTNPFA
PTKAIEKRAHWVKPTLVAEVTFGEWTGSGSIRHSVFLGLRTDKKATSIRRERAAHVEDVM
QTHTESKAGAARKSAAGSKADAKAGSVAGTDAKAVVDSKLPATLKVTNPDRLIDPVSGMT
KIGLVRYYALVSGLMLEHLKGRPLALVRAPAGVGGELFFQKHSETGKLPGVKQLPQELDP
DHPTMLEVASVQGLLSCAQWNVVEFHSQNAFAKTYEKPNRMVFDLDPGQGVSWQQIQEAA
QLMRAFLEQLGLPSFLKTSGGKGLHVVVPLKPQHGWDAVKGFSSFIVEHMARTLPDRFAF
KSGPKNRVGKIFIDYLRNGRGATTAVAWSARARPGMGISVPVAWNELEHLKGGDQWTVAT
VHTRLDHGNEPWADYAKSAVTLTKAMKQMGYKPG
NT seq
2805 nt
NT seq
+upstream
nt +downstream
nt
atggccatgaccgacgccctcaaactctacaaggccaagcgcaacttcgcgatcactccg
gaacccgccgaaggcggacaggaagggcaggaagcgctgacgttcgtgatccagaagcac
tgggcatcacggctgcactacgacttccgcctcgaactcgacggcacgatgaaaagctgg
gccgtccccaagggccccagctacgacagccacgacaagcgcatggccgtgcacgtggaa
gaccacccgatctcgtacaacgatttcgagggcgtcatcccggaaaaacagtacggcgcc
ggcaaggtgatcatctgggacaagggtacctggcacccggtcggcgatccgcgcaagggc
taccgcgacggcaacctgaagttcgagctgcgcggccacaagctgcgtggccgctgggtg
ctggtacgcatgcggcgttccggcgaaaagcaggagccctggctgctgatcaaggaaaac
gacgagtatgtacggccggccagcgaattctccgtcatcgacgagatgcccgacagcgtg
aaggcgctcggcatgcccacggacgagcagctgacgcccgaagcggaagaagcggaaagc
atcgccgagcagcaccagggcaagccggcgcgcaaggccgcggccaggaaggggcccgcg
gcgaaatcggctgcaacgaaatcggcggcagcgaaatcgggcgcaacgaaagcggcggca
acgaaagcggcggcaacgaaggccacggcaacgaaggccacggcaacaacgccggctgcc
aggaaggcgccggccaaagggaagggcaaggcgacggacaccggcgacccgctcgcgaag
gtgccgctgccggccacgctgtcgcccgagctggcgacgctggtcgacagtccgccgggc
gaccctgaaaactggatctttgaactgaagttcgatggctaccggctgctggcccgcgtc
gagggcaagtcgatcgaactgtggacccgcaacggcaacgactggacccataaactggaa
ccgctgcgcgcggcgctggaaaagctgcagctgcccgacggctggtacgacggcgagatc
gtcgtgcacgatgcgaacgggcgccccaacttcggcctgctgcaacaggcgttcgacggc
gagaagacgaaaaaaatcgtgtacttcgtcttcgatgcgccgtacctggacggccacgac
ctgcgcgacgtgccgctggcccagcgccgcgaactgctgcgcacggtgctgggcgacgac
gagacgggccaggtgcgcttctcggccgagctggcggcgccgccggaggaaatcgtcgcc
gcggcgtgccggatgggccttgaaggcatcatcggcaagcggcgcgacgcgctgtacacg
tcgcgccgctcgggcgactggatcaagctgaaatgcgcgcagcgccaggaattcgtcatc
ggcggatacaccgatccgaaaggctcgcgggtcggcatcggctcgctgctgctgggctac
tacgacgacgagggcaagctgcactatgccggcaatgtcggtgccggtttcaacgacacg
tcgctgcgcgacatcatcgccaggctgaagaaggtggccagcgacacgaatccgttcgcg
cccaccaaggcgatcgaaaaaagggcgcactgggtcaagcccacgctcgtggccgaagtg
acgttcggcgaatggacgggcagtggctcgatccgccattccgtgtttctcggcctgcgt
acggacaagaaggcgaccagcattcgccgcgagcgggccgcccatgtggaggatgtgatg
cagacgcacactgaaagcaaggccggcgccgcccgcaagagcgccgcgggatcgaaggcg
gatgccaaggcgggatccgtcgccggaaccgacgccaaggcggtggtggacagcaagctg
cccgcaacgctgaaagtcaccaacccggaccggctgatcgatccggtcagcggcatgacc
aagatcggcctggtgcgctactacgcactggtgtccggactgatgctggaacacctgaag
ggccgcccgctggcgctggtgcgggccccggccggcgtcggcggcgagctgttcttccag
aagcattcggaaaccggcaagctgcccggcgtgaagcagctgccgcaggaactggacccg
gatcacccgacgatgctcgaggtggccagcgtgcagggcctgctgtcgtgcgcgcaatgg
aacgtcgtcgagttccattcgcagaacgcgttcgcgaagacctatgaaaagccgaaccgg
atggtgttcgacctcgaccccggccagggagtgtcgtggcagcagatccaggaagcggcg
cagctgatgcgcgccttcctcgagcaactgggcttgccgtcgttcctgaagaccagcggt
ggcaagggcctgcacgtggtcgtgccgttgaaaccccagcatggctgggatgccgtgaaa
ggcttttccagcttcatcgtcgagcacatggcgcgcacgctgccggaccgtttcgccttc
aagagcgggccgaagaaccgggtcggcaagatcttcatcgattacctgcgcaacggccgc
ggcgccaccacggcggtcgcctggtcggcccgcgcgcgccccggcatgggcatctcggtg
ccggtcgcgtggaacgaactggaacacctgaaaggcggcgaccagtggaccgtggccacg
gtgcacacccggctcgatcacggcaacgagccgtgggccgactatgccaagagcgccgtc
acgctgacgaaggccatgaagcagatgggctacaagcccggctga
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