Meriones unguiculatus (Mongolian gerbil): 110549166
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Entry
110549166 CDS
T05884
Symbol
Upf1
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
mun
Meriones unguiculatus (Mongolian gerbil)
Pathway
mun03013
Nucleocytoplasmic transport
mun03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
mun00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
110549166 (Upf1)
03015 mRNA surveillance pathway
110549166 (Upf1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mun03019
]
110549166 (Upf1)
Enzymes [BR:
mun01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
110549166 (Upf1)
5.6.2.5 RNA 5'-3' helicase
110549166 (Upf1)
Messenger RNA biogenesis [BR:
mun03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
110549166 (Upf1)
mRNA cycle factors
Common to processing body (P body) and stress granule
110549166 (Upf1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
ATPase
nSTAND3
Helicase_RecD
DEAD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
110549166
NCBI-ProteinID:
XP_021493724
LinkDB
All DBs
Position
4:complement(63054139..63076309)
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AA seq
1130 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTPPGGPGGAGGPSGA
GAGGAVGQLDAQVGPEGILQNGAVDDSVAKTSQLLAELNFEEDEEDTYYTKDLPVHACSY
CGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYN
CGCRNVFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKI
PSEQEQLRARQITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDAYQYQNI
FGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAFFTLPKTDSGNEDLVIIWLRDM
RLMQGDEICLRYKGDLAPLWKGIGHVIKVPDNLTQRPDYGDEIAIELRSSVGAPVEVTHN
FQVDFVWKSTSFDRMQSALKTFAVDETSVSGYIYHKLLGHEVEDVVIKCQLPKRFTAQGL
PDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVD
QLTEKIHQTGLKVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELS
SADEKRYRALKRTAERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMV
PVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPAL
SAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRT
EAANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDA
FQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHL
LSYYKEQKALVEGPLNNLRESLMQFSKPRKLVNTVNPGARFMTTAMYDAREAIIPGSVYD
RSSQGRPSNMYFQTHDQIGMISAGPSHVAAMNIPIPFNLVMPPMPPPGYFGQANGPAAGR
GTPKSKTGRGGRQKNRFGLPGPSQTTLPSSQASQDVASQPFSQGALTQGYVSMSQPSQMS
QPGLSQPELSQDSYLGDEFKSQIDVALSQDSTYQGERAYQHGGVTGLSQY
NT seq
3393 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggaggcgtacggccccagctcgcagacgctcaccttcttagacactgaggag
gccgagctgcttggcgccgacacccaaggctcggagttcgagttcaccgacttcaccctt
cccagtcagacgcagacgccccccggcggccccggcggcgcgggaggcccaagcggagcg
ggcgcaggcggcgcggtcggccagctcgacgcacaagttggaccagagggcatcttgcaa
aatggggctgtggatgacagtgtggccaagaccagccagctgctggcagagctgaacttt
gaggaagatgaagaggacacatactacaccaaggacctcccagtccatgcctgcagttac
tgcggaatccatgatcctgcctgcgtagtttactgcaataccagcaagaagtggttctgc
aacggtcgaggaaatacttctggcagccacattgtaaatcacctcgtgagggccaaatgc
aaggaagtgacactgcacaaggacgggcccctgggtgagacagtgctggagtgctacaac
tgcggctgccgcaacgtcttcctgctgggcttcatccctgcaaaggctgactccgtggtg
gtgctgctgtgcaggcaaccttgtgccagccagagcagcctgaaggacatcaactgggac
agctcacagtggcagcccctgatccaggaccgctgcttcctgtcatggctggtcaagatt
ccctcagagcaggagcagctgcgggcacggcagatcactgcacagcagatcaacaagctg
gaggagctgtggaaggagaatccttcagccaccctggaggacctggagaagccaggtgtg
gatgaggagccacagcatgtgctcctgcggtatgaggatgcctaccagtaccagaacatc
ttcgggccgctggtcaagctagaggctgactatgacaagaagctcaaggagtcacagact
caagataacatcacggtcaggtgggacctgggccttaacaagaagagaatcgccttcttc
actttgcccaagactgactctggtaatgaggatttagtcataatttggttaagagatatg
cggctcatgcagggtgatgagatctgtctgcggtacaaaggggacctggcgcccctatgg
aaggggattggccatgtcatcaaggtccccgataacttaactcagcggccagattacggt
gatgagattgctattgagctccgcagcagcgtgggcgcccccgtggaagtgacccacaac
ttccaggtggattttgtgtggaagtcgacctcttttgacaggatgcagagtgcgctgaag
accttcgctgtggacgagacctccgtgtcagggtatatctaccacaagctgctgggccac
gaggtggaggacgtggtcatcaagtgccagctgccgaagcgcttcacggctcaggggctc
cctgacctcaaccactctcaggtgtacgctgtgaagaccgtgctgcagagaccactcagc
ctcatccagggccctccaggcacaggcaagactgtcacgtcagccacaattgtctaccac
ctagctcggcagggcaatgggcctgtgcttgtttgtgccccaagtaacatcgccgtagac
cagctcacagagaagatacaccagacagggctgaaggttgtacgcctctgcgccaagagc
cgcgaggccattgactccccggtgtccttcctggccttgcacaatcagatcaggaacatg
gacagcatgcctgagctgcagaaactacagcagctgaaggacgagacaggcgagctgtcg
tctgcagatgagaagcggtaccgggcactcaagcgcacggctgagagagagctgctgatg
aatgcagatgtcatctgctgcacgtgtgtgggtgctggtgatccgaggctggccaagatg
cagttccgttccatcctcattgatgagagcacccaggccactgagcccgagtgcatggtg
cctgtggtcctcggggccaagcagctgatccttgtgggcgaccattgccagctgggtcca
gtagtgatgtgcaagaaggcagccaaggccggactgtcacagtcactcttcgagcgcttg
gtggtgctgggcatccggcccatccgcctgcaggtgcagtaccgcatgcaccccgcactc
agcgccttcccgtccaacatcttctacgagggctcattgcagaacggcgtcactgcagct
gatcgtgtcaagaagggctttgacttccagtggccacagcctgacaagcccatgttcttc
tacgtgacgcagggccaggaggagattgccagctccgggacgtcctacctcaacaggacg
gaggcagccaatgtggagaagataactacgaagctgctgaaggcgggtgcgaagcctgac
cagatcggcatcatcacaccctacgagggccagcgctcctacctggtgcagtacatgcag
ttcagcggctccctgcacaccaagctctaccaggaagtggagatcgccagtgtggatgcc
ttccagggccgggagaaggacttcatcatcctctcctgcgtgcgtgccaacgagcaccag
ggtattgggtttctaaacgaccccaggcgtctcaacgtggctctcaccagagcgaggtac
ggtgtgatcattgtgggtaacccaaaggcgctatcaaagcagcctctgtggaaccacctg
ctgagctactacaaggagcagaaggcgctggtggaagggccgctcaacaacctgcgggag
agcctcatgcagttcagcaagcctcggaagctcgttaacaccgtcaacccgggggcccgc
ttcatgacaacagccatgtatgatgcccgggaagccatcatccccggatcagtgtatgac
cggagcagccagggccggccttcgaacatgtactttcagacccatgaccagatcggcatg
atcagtgcaggccccagccacgtggccgccatgaacatccctattcccttcaacttggtt
atgcctcccatgccaccacctgggtactttggacaagccaatgggccggctgcgggccgg
ggcaccccaaaaagcaagactggccgtgggggccgccagaagaaccgcttcgggcttccc
gggcccagccagaccaccctgcctagcagccaggccagccaggatgtggcctcccagccc
ttttcgcagggtgccctcacacagggctacgtgtccatgagccagccctcccagatgagc
cagcccggcctctcccagccagaattgtcccaggacagctacctcggggacgagtttaag
tcacagatcgacgtggcgctctcccaagactccacctaccagggagagcgggcgtaccag
cacggcggggtcaccgggctgtcccagtactag
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