Meriones unguiculatus (Mongolian gerbil): 110562937
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Entry
110562937 CDS
T05884
Symbol
Lig1
Name
(RefSeq) DNA ligase 1 isoform X1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
mun
Meriones unguiculatus (Mongolian gerbil)
Pathway
mun03030
DNA replication
mun03410
Base excision repair
mun03420
Nucleotide excision repair
mun03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mun00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
110562937 (Lig1)
03410 Base excision repair
110562937 (Lig1)
03420 Nucleotide excision repair
110562937 (Lig1)
03430 Mismatch repair
110562937 (Lig1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mun03032
]
110562937 (Lig1)
03400 DNA repair and recombination proteins [BR:
mun03400
]
110562937 (Lig1)
Enzymes [BR:
mun01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
110562937 (Lig1)
6.5.1.6 DNA ligase (ATP or NAD+)
110562937 (Lig1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
110562937 (Lig1)
DNA replication proteins [BR:
mun03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
110562937 (Lig1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
110562937 (Lig1)
DNA repair and recombination proteins [BR:
mun03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
110562937 (Lig1)
NER (nucleotide excision repair)
Other NER factors
110562937 (Lig1)
MMR (mismatch excision repair)
Other MMR factors
110562937 (Lig1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
DDR
PucR
Motif
Other DBs
NCBI-GeneID:
110562937
NCBI-ProteinID:
XP_021515525
LinkDB
All DBs
Position
6:64857404..64890292
Genome browser
AA seq
911 aa
AA seq
DB search
MREAWRVKNQVQQMRKKEQERKGENSAATMQRSIMSFFQPTKEGKAKKPEKETPGNIREK
GPPPKVALKERNRVVPESDSPVKRPGRKAAQVLSSEGEEEEETPGTPKVQKPVSDSKQST
PPSPDTSPENSPFFTSSPSLDFSPSGFPKRRTARKQLPKRTVQDTPEEQDEDKDRAAKKR
KKEEESVTLTKTENIPTCKAGVKQEPQEEKQSKPPARAAKTLSSFFTPRKAAVKAEVKQE
ESSTPRKEETKGTLDPTSYNPSKNNYHPIEDACWEHGQKVPFLAVARTFEKIEEVSARLK
MIETLSNLLRSVVALSPPDLLPVLYLSLNCLGPPQQGLELGIGDGVLLKAVAQATGRHLE
SIRAEVAEKGDVGLVAENSRSTQRLMISPPPLTTSGVFTKFCDIAQLTGSASMTKKMDII
KGLFVACRHSEARFIARSLSGRLRLGLAEQSVLAALAQAVSLTPPGQEFPPAVVDAGKGK
TADARKMWLEEQGMILKQTFCEVPDLDRIIPVLLEHGLERLPDHCKLSPGVPLKPMLAHP
TRGVSEVLKRFEEVDFTCEYKYDGQRAQIHLLEGGEVKIFSRNQEDNTGKYPDIISRIPK
IKLPSVTSFILDTEAVAWDREKKQIQPFQVLTTRKRKEVDASEIQVQVCLYAFDLIFLNG
ESLARQPLSRRRQLLWENFVETEGEFVFATSLDTKDIEQIAEFLEQSVKDSCEGLMVKTL
DVDATYEIAKRSHNWLKLKKDYLDGIGDTLDLVVIGAYLGRGKRAGRYGGFLLAVYDEES
EELQAICKLGTGFSDEELEEHHQSLQALVLPTPRPYVRIDGAVAPDHWLDPSVVWEVKCA
DLSLSPIYPAARGLVDKEKGISLRFPRFIHVREDKQPEQATTSDQVACLYRKQSQIQNQQ
NSDLDSDFEDC
NT seq
2736 nt
NT seq
+upstream
nt +downstream
nt
atgagagaagcttggcgtgtcaagaaccaggtacaacagatgagaaaaaaagaacaagag
aggaaaggggagaattctgctgctaccatgcagagaagcattatgtcattttttcagccc
acaaaagagggtaaagcgaagaaacccgagaaggagacacccggaaacatcagagagaag
ggaccccctccaaaggtggcattgaaggagaggaatcgagtggtacctgagagtgattct
ccagtgaagaggccaggaaggaaggcagcccaagtcctgagcagtgaaggggaagaggaa
gaagaaacccctggcacccctaaagtccagaagcctgtgtcagactccaaacagagtact
cctcccagccctgacacaagtcctgagaacagcccttttttcaccagcagcccttcactg
gacttctccccgtcaggattcccaaagcgtcgcactgctcggaagcagctcccgaagcgg
acagttcaagacactccggaggagcaggatgaggacaaagatagagcagccaagaaaagg
aagaaggaagaagagtcagtaaccctgacaaagacagagaacattccaacgtgtaaggcc
ggagtgaaacaggagcctcaggaagagaagcagagcaagcctcctgccagagctgccaag
acactcagcagcttcttcactccccggaaggcagcagtgaaagctgaagtgaaacaagaa
gagtcaagtactccaagaaaggaagagaccaagggaaccctggatccaacaagttataat
ccttccaagaataactaccatcccattgaagatgcctgctgggaacacggccagaaggtc
ccttttctcgctgtggcccggacatttgagaagattgaggaggtttctgctcggctcaag
atgatagagacactaagcaacctgctacgctctgtggtggcactatcacctccagacctg
ctccctgtcctctacctcagcctcaactgccttgggccacctcaacaaggactagagctg
ggcattggtgacggtgttcttctcaaggcagttgctcaggccacaggtcgtcatctggag
tccatccgggctgaggtggctgagaagggtgatgtggggctggtagctgagaacagtcgc
agcactcagagactcatgatatccccacctccactcaccacctctggagtctttaccaaa
ttctgcgacattgcccagctcactggcagtgcttctatgaccaagaagatggacatcatc
aagggcctttttgttgcctgccgccactcagaagcccggttcattgccaggtccctaagt
gggcggctgcgccttgggctggctgagcagtcggtgctggctgcgcttgcccaagctgtg
agccttacaccccctggccaagaatttcccccagccgtggtggatgctgggaagggcaag
acagcagacgccagaaagatgtggttggaagaacaaggaatgatcttgaagcaaaccttc
tgtgaggtgcctgacctggaccgaatcatccctgtgctgctggaacatggcctggaacgt
ctcccagaccactgcaaactgagcccaggggtccctcttaaaccaatgctggcccatccc
actcggggtgtcagtgaggtactgaaacgcttcgaggaggtagatttcacctgcgagtat
aaatacgatggacaacgggcacagatccaccttctggaaggaggagaggtgaagattttc
agcaggaaccaggaggacaacacaggaaaatatcctgacatcatcagccgcattcccaag
ataaaactcccctcagtcacatctttcattttggacactgaggcagtggcctgggaccgg
gaaaagaagcagatccagccattccaagtgctcaccacacgcaagcgcaaggaggttgac
gcatcagagatacaggtgcaggtgtgtctgtatgcctttgacctcatcttcctcaatgga
gagtccctggctcgccagcccctgtctcgacgccggcagctgctgtgggagaactttgtg
gagacagagggtgagtttgtctttgccacctccttggataccaaggacattgagcagatt
gctgaattcttggagcagtcagtgaaggactcctgtgagggcttgatggtgaagaccctg
gatgttgatgccacatatgagattgctaagaggtcacacaactggctcaagctgaagaag
gactaccttgatggcattggcgacactctggaccttgtggtgattggcgcttacctgggc
cggggaaagcgggctggccgatatgggggcttcctgctggctgtctatgatgaggagagt
gaagagctgcaggccatatgtaagctgggaaccggattcagtgatgaggaactggaggag
catcaccagagccttcaggccctggtattgcccactccacgtccgtatgtgaggattgat
ggggcagtggccccagaccactggctagacccaagcgttgtatgggaggtgaagtgtgct
gatctctccctgtcccccatctaccctgctgcacggggattggtggacaaagagaaaggg
atctcccttcgttttcctcggttcattcatgttcgtgaagacaagcagccagagcaggcc
actaccagtgaccaggtggcctgtttgtaccggaaacagagtcagattcagaaccagcaa
aactcagacttggactccgactttgaagactgttaa
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