Microcaecilia unicolor: 115479545
Help
Entry
115479545 CDS
T09142
Symbol
UPF1
Name
(RefSeq) regulator of nonsense transcripts 1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
muo
Microcaecilia unicolor
Pathway
muo03013
Nucleocytoplasmic transport
muo03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
muo00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
115479545 (UPF1)
03015 mRNA surveillance pathway
115479545 (UPF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
muo03019
]
115479545 (UPF1)
Enzymes [BR:
muo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
115479545 (UPF1)
5.6.2.5 RNA 5'-3' helicase
115479545 (UPF1)
Messenger RNA biogenesis [BR:
muo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
115479545 (UPF1)
mRNA cycle factors
Common to processing body (P body) and stress granule
115479545 (UPF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
ATPase
nSTAND3
Helicase_RecD
DEAD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
115479545
NCBI-ProteinID:
XP_030073365
UniProt:
A0A6P7ZD99
LinkDB
All DBs
Position
11:complement(88143043..88336503)
Genome browser
AA seq
1099 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTQGQGQSQLDGQVNG
PDGVLQNGAVDDVAKASQLLAELNFEEDEEDTYYTKDLPLHACSYCGIHDPACVVYCNTS
KKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPAK
ADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITAQ
QINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKKL
KESQTQDNITVRWDLGLNKKRIAYFTLPKTDSDMRLMQGDEICLRYKGDLAPLWKGIGHV
IKVPDNYGDEIAIELRSSVGAPVEVTHNFQVDFVWKSTSFDRMQSALKTFAVDETSVSGY
IYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTV
TSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCAKSREAIDSPVSFLA
LHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICCTCVGA
GDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGL
SQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWP
QPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTKLLKAGAKPDQIGIITPYEGQR
SYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLN
VALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRESLMQFSKPRKLV
NTINPGARFMTTAMYDAREAIIPGSVYDRSSQGRPSNMYFQTHDQIGMISSGPSHVTAMN
IPIPFNLVMPPMPPPGYFGQANGPAAGRGIPKGKTGRGVRQKNRGIGIQGIGPSNLPNSQ
ASQDVVSQPFSQGPLTQGYISMSQPSQMSQPGLSQPELSQDSYLGDEFKSQIDVALSQDS
TYQGERAYQHGGVTGLSQY
NT seq
3300 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggaggcgtacgggcccagctcgcagaccctcaccttcctggacacggaggag
gcagagttgctgggcgccgacacccagggctccgagtttgagttcaccgacttcacgctg
cccagccagacgcagacgcagggtcaggggcagagccagctggatggccaggttaatgga
ccagatggtgtcctgcagaatggagcagtggatgatgtagccaaagctagccagttgctg
gcagagcttaactttgaagaagatgaagaagatacttactataccaaggaccttccttta
catgcttgcagttactgtggtatccatgatccagcctgtgtggtttactgcaacaccagc
aagaaatggttctgtaatggacgtggcaatacttctggaagccacattgtgaatcacctt
gtaagggcaaaatgtaaggaggtgacactccacaaggatgggccactgggtgagactgtt
ttggagtgctacaactgtggctgtcggaatgtatttcttcttggcttcatccctgccaag
gctgactcagtggttgttttgctgtgcaggcagccatgtgccagtcaaagcagcttgaag
gacatcaactgggacagctcccagtggcagccacttattcaggatcgttgctttctttct
tggctggtaaagattccctctgagcaggagcagctgagggctcgtcagattactgctcag
caaattaataaactggaggagctctggaaggaaaacccatctgcaacactggaggatctg
gagaaacctggagtggatgaggaacctcagcatgtcctgctgagatatgaggatgcatat
caataccaaaacatttttggtcctcttgtcaaacttgaagcagattatgataagaaactc
aaagagtcacagacccaagataacatcactgtaagatgggacctgggcctcaacaagaag
agaattgcatacttcaccttaccaaagactgactctgatatgcgtctcatgcaaggtgat
gagatctgtttgaggtacaaaggagacctggcacctctgtggaaaggaattggacatgtt
ataaaagttcctgacaattatggtgatgaaatagccattgagctgagaagcagtgttgga
gccccagtggaggttacgcataacttccaagtggattttgtatggaagtcaacttcattt
gacagaatgcagagtgctttaaagacatttgctgtggatgaaacatcggtatctggctat
atttaccacaagcttctcggtcatgaagtggaggatgtgatcattaaatgccagctgcct
aaacgttttacagcacaaggacttcctgacctcaaccactctcaggtgtatgctgtgaag
actgttctgcagcgtcctctcagccttatccagggcccaccgggtacaggaaaaacagtg
acatcagctaccattgtataccacctggcaaggcaaggcaacgggcctgttctggtctgt
gccccgagtaacatagctgtggatcagctgactgaaaaaattcatcagacagggttgaag
gttgttcgactgtgtgcaaagagccgggaggccattgattctcctgtatcgttcttagca
ttgcacaaccagatacgaaatatggacagcatgcctgaactccagaaactgcagcagtta
aaggatgaaacaggagaattatcctctgctgatgagaaacgctatcgtgccttaaagcgg
acagcagaacgtgaattgcttatgaatgcagatgtaatttgctgcacttgtgtgggagca
ggtgatccaaggcttgcaaagatgcagttccgttcaattttgattgatgagagtacccag
gctacagaacctgaatgtatggtaccagtggtgcttggagctaaacagttgatcctggtt
ggcgatcattgccagctgggcccagtggtgatgtgcaagaaagctgcaaaggcagggctg
tctcagtccctcttcgaaagactcgtggtcctggggattcgtccaattcgtcttcaagtt
cagtaccgtatgcatcctgcactcagtgctttcccctctaatatattctatgaaggatca
cttcagaatggagttactgcagcggatcgtgtaaagaaggggtttgattttcagtggccc
cagccagacaagccaatgttcttctatgtgacacaagggcaagaagaaattgccagctct
ggcacgtcctacctgaacaggacagaagctgctaatgtggagaagatcaccacaaaacta
ctgaaggcaggtgctaagccggaccagattggtatcattaccccatacgagggccagcgc
tcctacctggtgcagtacatgcagttcagtggttctttgcacacaaaactctaccaggaa
gtggaaattgcaagtgttgatgcttttcagggacgagagaaggacttcatcatcctttca
tgtgtgagagcgaatgaacaccaggggattggctttttaaatgaccccagacgtcttaat
gtggctcttaccagagcaaggtatggagtaattattgtgggaaatccaaaagctttgtca
aagcagccactctggaaccatctgttgaattactataaggagcagaaggtgttggtggaa
ggacccctgaataatctccgggagagcctaatgcaattcagcaagccccgtaaacttgtc
aataccatcaacccgggtgcccgattcatgacaacagccatgtatgatgctcgagaggcc
attattcctggatctgtgtatgatcgcagcagccaaggtcgaccttccaacatgtacttt
caaactcatgatcagattggcatgattagttctggacccagccatgtcactgctatgaac
attcctatccctttcaaccttgtgatgccaccaatgccacctccaggatactttgggcag
gctaatggaccagctgcaggacgtggtataccaaaaggcaagactggccgtggtgtgcgc
cagaaaaatcgtggcattggaattcaaggcattggtccatctaatctgccaaatagccag
gctagtcaagatgtggtgtctcagccattttcacagggtccgttgactcagggttacatc
tccatgagtcagccatctcaaatgagccagccaggcctctcccagccagagttatcccag
gacagttaccttggtgatgaatttaaatctcaaattgacgtggcattgtcgcaggactcg
acttaccagggtgaacgtgcatatcaacatggtggtgtgacgggactgtcacagtactag
DBGET
integrated database retrieval system
