Mucilaginibacter sp. PAMC 26640: A0256_05625
Help
Entry
A0256_05625 CDS
T04335
Name
(GenBank) DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
mup
Mucilaginibacter sp. PAMC 26640
Pathway
mup03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
mup00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
A0256_05625
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mup03400
]
A0256_05625
Enzymes [BR:
mup01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
A0256_05625
DNA repair and recombination proteins [BR:
mup03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
A0256_05625
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
mRNA_cap_enzyme
DNA_ligase_OB_2
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
AMR30941
LinkDB
All DBs
Position
complement(1314069..1316813)
Genome browser
AA seq
914 aa
AA seq
DB search
MSLEKYAEKRDFTKTAEPKGGKSPEKDKLRFVIQKHDASRLHYDFRLEMDGVLKSWAVPK
GPSTDPKNKRLAMMVEDHPYDYRLFEGIIPQGEYGGGTVIVWDEGTYEPIEEIKGKKAQE
KHLLKQLKDGSLKIKLHGEKLEGEYALVKTHGMGENGWLLIKHKDDFASAADITKKDKSV
LTGKTIEKMEKTSEKVWQHGHEEDVDDTKTNSKKKAGKIKPQVEAIEDVIEEAKPAEKVD
VEAVLKKAPKGAIPTGMKPMLATLVDKPFDDPDWLYEIKWDGYRALGFINKGEVQLLSRN
NKSFNEKYYPITQLLESWKINAVIDGEILVLNDKGVSNFGALQNWRSEADGELMLYVFDI
LWYDGKNLMDLPLTQRQAILKEVLPTNDDRIRMSQVFTASGIEFFEAAEKIGLEGIMAKK
ADSTYSADNRSKDWLKIKINKRQEVVIGGFTKNEGTAKQFSSLLLGVYEGGRFQYVGKVG
TGFSDKLQKEMMASFKPLIVDKTPFDTEPDVNKPSRFRPNPPKAKATWLKPELVCEVSFT
EVTSDGVFRHPSFQGMRDDKKAKDVVRETEVDTDELVADEVPEKAAKPKEHKHRLVKAPK
ESAKRTLLNPKEETQVKKICGHDLKFTNLSKVYWPEDGITKRDMFNYYYQVAEYILPYLK
DRPQSLNRFPGGIHGPSFYQKDVKGKSPDWVRTFPYTTSDGEEKDYLVGHDEATLLWMAS
LGCIEMNPWFSRVQSPDNPDYCIIDLDPDKNTFDQVISAALEVKKVLDAIDVPCYCKTSG
STGMHIYIPLGAKYDYDQSQMFARLIVNIVHKEIPEYTSLERMIKNRDGKMYLDFLQNRP
GATIAGPYSLRPKPGATVSMPLHWDEVKPGLTMKDFTIHNAIARLKKEGDLFKGVLDEGI
DLEKTITKAKSIFK
NT seq
2745 nt
NT seq
+upstream
nt +downstream
nt
atgagcctggaaaaatatgcagagaagcgggactttactaaaaccgcagaacccaagggt
ggtaaaagtcccgagaaggataaattgcgcttcgtgatccaaaagcacgacgcaagccgt
ttgcattatgatttcaggctggagatggatggcgtgcttaagagctgggcggtacctaag
ggcccatccaccgaccccaaaaacaaacggctggctatgatggtggaagatcacccgtat
gactatcgcttgtttgaaggtattatccctcagggcgaatatggcggcggtacggtgatt
gtttgggatgaaggcacctacgagcctattgaggaaattaagggcaagaaagcacaagaa
aagcatctgctcaagcaactaaaagatggctccctcaaaataaaactccacggggaaaaa
ttagagggcgagtacgcgctggtaaaaacccatggcatgggcgagaatggctggctgctg
atcaagcataaagacgattttgcgtcggctgccgacattaccaaaaaagataaatcggta
cttaccggtaaaaccattgaaaagatggaaaaaaccagtgagaaggtttggcagcacggc
cacgaggaagatgtggacgatacaaagactaatagtaaaaaaaaagcaggtaaaataaaa
cctcaggttgaagcaatagaagacgtaattgaagaagcaaaacccgcagagaaagttgat
gttgaagccgtattaaaaaaggcacccaaaggcgctatccctacaggaatgaaacccatg
ctggctacattggttgataaaccatttgatgaccccgactggctctacgaaataaaatgg
gatggttaccgtgcacttggctttattaacaaaggcgaagtacaattgctctcccgtaat
aataagtcgttcaacgaaaaatattaccccattacccagctattggaaagctggaagatc
aacgctgtgatagatggtgaaattttggtgctgaacgacaaaggcgtatctaactttggt
gcactgcaaaactggcgaagtgaagcagacggcgaattgatgctgtacgtattcgatata
ttgtggtatgatggtaaaaacctgatggacctgcctcttacacaacggcaggctattctg
aaagaagtgctaccaactaacgatgaccgaatccgaatgagccaggtgtttacggccagc
ggaattgagttttttgaagctgctgaaaagattggtttggaaggtattatggcaaagaaa
gccgatagtacttatagcgccgataatcgttccaaagactggctgaagatcaagattaac
aaacgccaggaagtggtgattggtggttttacaaaaaatgaaggcacagccaagcaattt
agctcactgctgttaggcgtttatgaaggtggccgctttcagtatgtaggcaaggttggc
accggcttttctgataagctgcaaaaggaaatgatggcatcatttaagccgttaattgtt
gataaaacgccatttgacaccgagccggatgtaaacaagccatcgcgcttcaggcctaat
ccgccaaaggcgaaagctacctggttaaagccggagctggtttgcgaagtaagttttacg
gaagtaaccagcgacggtgtatttcgccacccctcttttcagggcatgcgggatgacaaa
aaagcgaaagatgttgttcgggaaacggaagtggataccgatgagttagtagcagatgaa
gtgccggaaaaagcagcaaagccaaaagagcataaacaccgcttagttaaagcgccaaaa
gaatcggcaaagcgtacgctgcttaatcctaaggaagaaacgcaggttaaaaagatctgc
gggcacgatctgaaatttactaacctcagcaaagtatactggcccgaggatggcatcacc
aagcgggatatgttcaattactattaccaggtagccgagtatattttaccatatttgaaa
gaccggccgcaatcgctcaaccgtttcccggggggcattcacgggccgagtttttaccag
aaggatgtaaaaggcaaatcgccggattgggtgcgcactttcccttatactaccagcgat
ggcgaagaaaaggactaccttgtggggcacgatgaagctaccctgctgtggatggcatca
ttgggatgtattgaaatgaacccctggtttagccgtgtgcagtcgcccgataatccggac
tattgcatcatcgacctcgacccggataaaaacaccttcgaccaggtgatctcggccgct
ttagaggtaaaaaaagtattggatgccatcgatgtgccttgctattgcaaaacatccgga
tccaccgggatgcatatttatatcccgctcggtgcaaaatacgactatgaccagtcgcaa
atgtttgcccggttaatcgtaaacattgttcacaaggaaattccggagtatacttccctg
gagaggatgattaaaaaccgggacggcaaaatgtacctcgattttctgcaaaaccgcccg
ggcgcaaccattgcgggcccatattcgctacggccaaagccaggcgcaacggtatctatg
cctttgcattgggacgaagtaaagccgggcttaacgatgaaagattttaccattcataac
gctatagcgcggctcaaaaaagaaggcgacttgtttaaaggcgtactggatgaaggaata
gacctggagaaaacgataacgaaagcgaaaagtatattcaagtaa
DBGET
integrated database retrieval system
