Musa acuminata (wild Malaysian banana): 103979069
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Entry
103979069 CDS
T03447
Name
(RefSeq) polyadenylation and cleavage factor homolog 4-like
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
mus
Musa acuminata (wild Malaysian banana)
Pathway
mus03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
mus00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
103979069
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mus03021
]
103979069
03019 Messenger RNA biogenesis [BR:
mus03019
]
103979069
Transcription machinery [BR:
mus03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
103979069
Messenger RNA biogenesis [BR:
mus03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
103979069
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
zf_UBZ
Motif
Other DBs
NCBI-GeneID:
103979069
NCBI-ProteinID:
XP_009393367
UniProt:
A0A804IFL0
LinkDB
All DBs
Position
3:23644605..23652402
Genome browser
AA seq
1118 aa
AA seq
DB search
MEMENSRRSAMDRSREPGLKRPRLAAANAADRGRVASNRDRTLPPLRTGGQTLAPRAGER
QERDDVVRRGSHQELVAQYKTALAELTFNSKPIITNLTIIAGESLHAAKEIAALICANVL
EAPSGQKLPSLYLLDSIVKNIGKDYIKYFAARLPEVFCKAFKQVESSIHPSMKHLFGTWK
GVFPLAPLQIIEKELGFPPVINGSSGSASSKLDSQPQRPAHSIHVNPKYLEARQRLQQSP
RNMQQPQKELVNNVICEKKGLKDVRDHVYASDISRESDPGIGRVSERLKDRDEHDKTYYG
AGMAATEAQLNRRKGFDVNHSNGSNQVSGSANASAQLTSVDLVDTDRSKLEASRSWKISE
EEEYLWDEMKTRKTDYGGINYLQKVGWNNNKADKTASLGRGKWIPLESGHVESNVNKVDA
FSQLVKTAKGEGRVLAYESLGDYLPPLHAKQDTDLGFSMEASSNSLLQQRASSENHSSSF
WPSHEASQSVVGSNYKGSSVGQLKEQSISFSGGSSTSTSSSLPLPGLRSSVLSSNLSSYV
HIPGSSGTSGQQRPQPLRPPSLSSQLPPSSVHIQQGKPHDSIDHNHFQSHSFSQVDQKAL
HLGGQQNQVQHLPGSPSNFLAKNHAQPSLSSSITSLSDVSQQLDGLINAANRLSSRDHLP
LTQQSQHNLSKWQTENQPQPAKPQPPLQSVTQSQTEKPPLLPLAIGAHWSGKDSGMSYSN
NAAVDVSTPPTTSSLLTAIMNGGLFPKNSVSGFQKASIQPPLPIGPPPVQALTSTAPSDT
PSLLAPISLGNIPDVKSTTHFGDVMPPLPLGPPPSSSLVGVNSENSKTSDPNVNSLSSLL
SSLVAKGLIASSSTELPTVSAAQSSNKVPDQSSVFASKSLEQIPPILTTSSTPPTLAEEP
AASKSVESGMLSLSNAAEPKDIGIEFKSEILRGFHPSVIRSLLDDLVHQCHICGLRLRLQ
EQLQCHLDWHVSQKSVISNFNPKSRKWFSNRTNWLDGSMRPESRHLEAAIFLEEVVPIKE
KSEPMVPADESQSICALCGEPFEDIYSEATDEWMYKGTVYLNLPSKQDDANNMDGTAGKS
LIVHAQCTIQRSADDTDIVEHDKVDQPCAPRQPNLNSG
NT seq
3357 nt
NT seq
+upstream
nt +downstream
nt
atggagatggagaactcccgcagatccgccatggaccgctcccgagaaccgggcttgaag
cggcctcggctggcggcagcgaacgccgcggaccggggccgcgtcgcctccaaccgggac
cggacgcttcctccgctgaggaccggggggcagacgttggctcctagggcaggggagagg
caagagagagacgacgtcgtgagaagagggtcgcatcaggaacttgtggcgcagtacaag
acggcgctcgccgagctaacattcaattccaagcccatcatcactaatctgaccattatc
gcgggagagagccttcacgccgccaaggaaattgccgctcttatctgcgccaatgtcctt
gaggcacccagtggacagaagttgccatcgttgtatctgctagatagtatcgtgaagaat
atcgggaaagattatattaaatattttgctgcaaggctacctgaggtcttctgtaaggcc
ttcaaacaggttgaatcttctattcatcctagtatgaaacatctgtttgggacatggaaa
ggagtttttccattggcccctcttcagataattgaaaaagagctaggcttcccaccggtc
atcaatggttcatctggatcagcatcatcaaaacttgattcccaaccacaacgtccagct
cacagcattcatgtgaatccaaaatacttggaggcgaggcagcgccttcaacaatcacct
aggaatatgcaacagccacagaaggaattagtaaacaatgttatatgtgagaaaaaagga
cttaaagatgttagagatcatgtatatgcttccgatatttcacgagagtcagaccctggc
ataggaagagtcagtgaaaggcttaaggaccgagatgaacatgacaaaacatattatggt
gctggtatggctgctactgaagcacagcttaatagaaggaaaggattcgatgttaatcat
tctaatggaagcaatcaagtatctggatctgcaaatgctagtgctcagctaacttcagtt
gacttggttgatacagatagaagcaaattagaagcatctaggagctggaagatctctgag
gaggaagagtatctgtgggatgaaatgaaaacaagaaaaacagattatggaggtatcaac
tacttgcaaaaagttgggtggaataataataaagctgataagactgccagccttggaaga
ggtaaatggatccctctggagtctgggcatgtagagtccaatgtgaacaaagttgatgcc
ttctctcaattagtgaagactgctaaaggagaaggcagagtgctggcatatgagagcctt
ggtgattatcttccaccacttcatgccaagcaggacactgatttgggattcagtatggag
gcttcttcgaattcactattgcagcaaagggcttcatctgaaaatcattcctcatccttc
tggccctcccatgaggcgtcacaatcagtggttggatcaaattataaaggctcaagtgtt
ggtcaactgaaagaacaatccatttctttcagtggtggttcatctacaagcactagttct
tctttgcctcttccagggctgagatcctccgtcctttcttcgaatttgagctcttatgtt
catatcccaggttcaagtggaacttctggacagcaaaggccacaacctttacgacctcca
tcactgtcttctcagttacctccatcttcagtgcacattcaacaagggaagccacatgac
tcaattgatcataatcattttcaatctcattcattctctcaagtggatcagaaggctttg
catctgggggggcaacaaaatcaagtgcaacatctaccagggtctccaagtaattttctt
gctaaaaatcatgctcagccaagtttatcaagctcaataacatccctctcagatgtttct
caacaacttgatggtttaattaatgctgctaatcggttgagttcaagggatcatcttcct
ttgacacagcaatcacaacataatctatccaaatggcagacagaaaatcagcctcagcct
gccaagcctcaaccgccccttcagagtgtaacccagtctcagaccgagaagccaccactt
ctgcctctggcaattggagctcattggagtggaaaagactctgggatgagctactcaaat
aatgctgctgttgatgtttcaacaccgcctaccacgagtagtttgctgactgctattatg
aatggtggtttattcccaaagaattcagtaagtggcttccaaaaggcaagtatacagcct
cctttacctattgggcctcctcctgttcaagctttgacatcaactgctccttcagatact
ccatcattgttagctcctatttcccttggtaatataccagatgtgaagtcaaccacccat
tttggagatgtgatgcctcccctgccacttgggcctccaccttcatcatccttggttggt
gtgaactccgagaactccaagacatctgatcccaacgtgaactcactttcaagtcttttg
agttccttggttgcaaaaggtttaatagcctcatcatcaactgagttgccaactgtatct
gcagctcagtcatctaataaggtcccagatcagtccagtgtctttgctagcaaaagtttg
gagcaaattcctccgatcttaactacctcaagcactcctccaactttggcagaagagcct
gctgcttcaaaatcagttgaaagtggcatgctatcgctatccaatgcagctgaaccaaag
gatataggcattgagttcaaatcagaaattttacgtggatttcatccttcagtcatcaga
agtctgctagatgatctagtgcatcagtgccacatatgcggtctaagacttagactacaa
gagcagcttcaatgtcatttagattggcatgtctcacagaagtctgtgataagtaatttt
aacccgaagtctagaaaatggttttcaaataggacaaattggctcgatggtagcatgaga
ccagaatctcgtcatttagaggcagcaatttttttggaggaagttgtcccaattaaagag
aaatctgaaccaatggttcctgcagatgagagccaaagtatatgtgcactatgtggagaa
ccatttgaggatatatactctgaagcaacggatgaatggatgtacaaagggactgtatat
ttgaatctaccaagcaaacaagatgatgcaaacaatatggatggcactgctggtaagtct
cttattgtacatgcacagtgcacaatacaaaggtctgctgatgatacagatattgtggag
catgataaagtggaccaaccatgtgcaccgaggcaacctaatttgaattcagggtga
DBGET
integrated database retrieval system
